CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh3_kg.C_70295
(
Neurospora discreta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh3_kg.C_70295
T50964_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CADANIAG00004740
M241_0.6
Aspergillus nidulans
UACUAMK
RNAcompete
Ray et al.(2013)
RNCMPT00287
0.746
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh3_kg.C_70295
RRM
112
182
LFVGNLAGETTDESLLKAFSRWKSVQKAKVVRDKRTTKSKGFGFVSFSDPEDFFQAAKEMNGKYIQSHPVV
Links
Other
RRM
family RBPs
Other
Neurospora discreta
RBPs
47 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NCU03099
Neurospora crassa
NCU03099
I
1.000
estExt_Genewise1Plus.C_50687
Neurospora tetrasperma
estExt_Genewise1Plus.C_50687
I
1.000
CHGG_00842
Chaetomium globosum
CHGG_00842
I
0.986
estExt_fgenesh1_pg.C_20919
Myceliophthora thermophila
estExt_fgenesh1_pg.C_20919
I
0.958
Pa_1_11770
Podospora anserina
Pa_1_11770
I
0.958
estExt_Genewise1Plus.C_13260
Thielavia terrestris
estExt_Genewise1Plus.C_13260
I
0.958
e_gw1.1.2591.1
Trichoderma atroviride
e_gw1.1.2591.1
I
0.915
MGG_01274
Magnaporthe oryzae
MGG_01274
I
0.915
e_gw1.3.1071.1
Trichoderma reesei
e_gw1.3.1071.1
I
0.915
gw1.33.170.1
Trichoderma virens
gw1.33.170.1
I
0.901
gw1.6.1720.1
Cryphonectria parasitica
gw1.6.1720.1
I
0.901
fgenesh1_pg.sca_1_chr1_3_0000264
Nectria haematococca
fgenesh1_pg.sca_1_chr1_3_0000264
I
0.873
VDAG_04412
Verticillium dahliae
VDAG_04412
I
0.873
GLRG_01583
Colletotrichum graminicola
GLRG_01583
I
0.873
FGSG_11902
Fusarium graminearum
FGSG_11902
I
0.859
FOXG_00280
Fusarium oxysporum
FOXG_00280
I
0.845
FVEG_01237
Fusarium verticillioides
FVEG_01237
I
0.845
BC1G_02746
Botrytis cinerea
BC1G_02746
I
0.803
SS1G_09871
Sclerotinia sclerotiorum
SS1G_09871
I
0.803
PABG_01757
Paracoccidioides brasiliensis
PABG_01757
I
0.775
An11g02050
Aspergillus niger
CADANGAG00008541
I
0.761
UREG_01087
Uncinocarpus reesii
UREG_01087
I
0.761
MCYG_08625
Microsporum canis
MCYG_08625
I
0.761
BDBG_03382
Blastomyces dermatitidis
BDBG_03382
I
0.761
GSTUMT00010522001
Tuber melanosporum
GSTUMT00010522001
I
0.761
CIMG_01152
Coccidioides immitis
CIMG_01152
I
0.761
HCAG_05883
Histoplasma capsulatum
HCAG_05883
I
0.761
CPSG_02060
Coccidioides posadasii
CPSG_02060
I
0.761
AFUA_6G08040
Aspergillus fumigatus
CADAFUAG00002290
I
0.746
CADANIAG00004740
Aspergillus nidulans
CADANIAG00004740
D
0.746
NFIA_053730
Neosartorya fischeri
CADNFIAG00004585
I
0.746
AFLA_036830
Aspergillus flavus
CADAFLAG00003057
I
0.746
fgenesh1_pm.00118_#_519
Aspergillus carbonarius
fgenesh1_pm.00118_#_519
I
0.746
AO090003000122
Aspergillus oryzae
CADAORAG00000798
I
0.746
ARB_07912
Arthroderma benhamiae
ARB_07912
I
0.746
TEQG_04534
Trichophyton equinum
TEQG_04534
I
0.746
TESG_08545
Trichophyton tonsurans
TESG_08545
I
0.746
TERG_02769
Trichophyton rubrum
TERG_02769
I
0.746
TRV_04123
Trichophyton verrucosum
TRV_04123
I
0.746
Pc12g10950
Penicillium chrysogenum
Pc12g10950
I
0.732
ATEG_05852
Aspergillus terreus
CADATEAG00002953
I
0.732
ACLA_082600
Aspergillus clavatus
CADACLAG00007506
I
0.732
EAT76715.1
Phaeosphaeria nodorum
EAT76715.1
I
0.704
AB09441.1
Alternaria brassicicola
AB09441.1
I
0.704
estExt_Genewise1.C_320079
Cochliobolus heterostrophus C5
estExt_Genewise1.C_320079
I
0.704
SNOG_15877
Stagonospora nodorum
SNOG_15877
I
0.704
PTRG_02274
Pyrenophora tritici repentis
PTRG_02274
I
0.704