CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GM25918
(
Drosophila sechellia
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0180774
T43894_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Hrb87F
M029_0.6
Drosophila melanogaster
GGUAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00029
0.993
Hrb98DE
M093_0.6
Drosophila melanogaster
RGUAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00096
0.779
Hrb98DE
M092_0.6
Drosophila melanogaster
GGUAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00095
0.779
Hrb98DE
M091_0.6
Drosophila melanogaster
GKUAGGK
RNAcompete
Ray et al.(2013)
RNCMPT00094
0.779
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0207395
RRM
26
95
LFIGGLDYRTTDEGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVE
FBpp0207395
RRM
117
186
LFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLD
Links
Other
RRM
family RBPs
Other
Drosophila sechellia
RBPs
29 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Hrb87F
Drosophila melanogaster
FBgn0004237
D
0.993
GJ23111
Drosophila virilis
FBgn0210213
I
0.979
GH19058
Drosophila grimshawi
FBgn0126525
I
0.979
GI10692
Drosophila mojavensis
FBgn0133456
I
0.979
GF17368
Drosophila ananassae
FBgn0094386
I
0.971
GK13334
Drosophila willistoni
FBgn0215343
I
0.971
GA26465-RA
Drosophila pseudoobscura
FBgn0247839
I
0.971
GG17033
Drosophila erecta
FBgn0109261
I
0.964
GE24426
Drosophila yakuba
FBgn0241543
I
0.964
AGAP002374
Anopheles gambiae
AGAP002374
I
0.800
GF18582
Drosophila ananassae
FBgn0095600
I
0.793
AAEL010467
Aedes aegypti
AAEL010467
I
0.793
GG11603
Drosophila erecta
FBgn0103900
I
0.786
GE23791
Drosophila yakuba
FBgn0240946
I
0.786
GK12096
Drosophila willistoni
FBgn0214107
I
0.779
GL13791
Drosophila persimilis
FBgn0151396
I
0.779
GM16385
Drosophila sechellia
FBgn0171300
I
0.779
GA26796-RA
Drosophila pseudoobscura
FBgn0248169
I
0.779
CPIJ001612
Culex quinquefasciatus
CPIJ001612
I
0.779
Hrb98DE
Drosophila melanogaster
FBgn0001215
D
0.779
CpipJ_CPIJ001612
Culex pipiens
CpipJ_CPIJ001612
I
0.779
GD21374
Drosophila simulans
FBgn0192810
I
0.779
GI10577
Drosophila mojavensis
FBgn0133341
I
0.764
GJ22934
Drosophila virilis
FBgn0210037
I
0.764
GH17116
Drosophila grimshawi
FBgn0124586
I
0.764
nasonia_NCBI_hmm916274
Nasonia vitripennis
nasonia_NCBI_hmm916274
I
0.750
amel4_ncbi_hmm27519
Apis mellifera
amel4_ncbi_hmm27519
I
0.743
BGIBMGA006405
Bombyx mori
BGIBMGA006405
I
0.707
PASA_GEN_6200011
Daphnia pulex
PASA_GEN_6200011
N
0.700