GA26796-RA (Drosophila pseudoobscura)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0248169 T44403_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Hrb98DE
M093_0.6 		Drosophila melanogaster RGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00096 		0.950
Hrb98DE
M092_0.6 		Drosophila melanogaster GGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00095 		0.950
Hrb98DE
M091_0.6 		Drosophila melanogaster GKUAGGK RNAcompete
Ray et al.(2013)
RNCMPT00094 		0.950
Hrb87F
M029_0.6 		Drosophila melanogaster GGUAGGG RNAcompete
Ray et al.(2013)
RNCMPT00029 		0.786
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0282744 RRM 28 97
FBpp0282744 RRM 119 188

Links

Other RRM family RBPs
Other Drosophila pseudoobscura RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GL13791 Drosophila persimilis FBgn0151396 I 1.000
GJ22934 Drosophila virilis FBgn0210037 I 0.979
GH17116 Drosophila grimshawi FBgn0124586 I 0.979
GI10577 Drosophila mojavensis FBgn0133341 I 0.971
GK12096 Drosophila willistoni FBgn0214107 I 0.964
GG11603 Drosophila erecta FBgn0103900 I 0.950
GE23791 Drosophila yakuba FBgn0240946 I 0.950
Hrb98DE Drosophila melanogaster FBgn0001215 D 0.950
GF18582 Drosophila ananassae FBgn0095600 I 0.950
GD21374 Drosophila simulans FBgn0192810 I 0.943
GM16385 Drosophila sechellia FBgn0171300 I 0.943
Hrb87F Drosophila melanogaster FBgn0004237 D 0.786
GA26465-RA Drosophila pseudoobscura FBgn0247839 I 0.786
GK13334 Drosophila willistoni FBgn0215343 I 0.786
GG17033 Drosophila erecta FBgn0109261 I 0.786
GJ23111 Drosophila virilis FBgn0210213 I 0.779
GE24426 Drosophila yakuba FBgn0241543 I 0.779
GM25918 Drosophila sechellia FBgn0180774 I 0.779
GH19058 Drosophila grimshawi FBgn0126525 I 0.779
GI10692 Drosophila mojavensis FBgn0133456 I 0.779
GF17368 Drosophila ananassae FBgn0094386 I 0.779
amel4_ncbi_hmm27519 Apis mellifera amel4_ncbi_hmm27519 I 0.771
nasonia_NCBI_hmm916274 Nasonia vitripennis nasonia_NCBI_hmm916274 I 0.750
AAEL010467 Aedes aegypti AAEL010467 I 0.743
CPIJ001612 Culex quinquefasciatus CPIJ001612 I 0.736
CpipJ_CPIJ001612 Culex pipiens CpipJ_CPIJ001612 I 0.736
AGAP002374 Anopheles gambiae AGAP002374 I 0.729