SOCG_02545 (Schizosaccharomyces octosporus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 SOCG_02545 T30686_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
SOCG_02545T0 RRM 158 226
SOCG_02545T0 RRM 242 311

Links

Other RRM family RBPs
Other Schizosaccharomyces octosporus RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SPOG_01457 Schizosaccharomyces cryophilus SPOG_01457 N 0.986
SJAG_03853 Schizosaccharomyces japonicus SJAG_03853 N 0.942
SPBC660.15 Schizosaccharomyces pombe SPBC660.15 N 0.942
estExt_GeneWisePlus.C_210250 Trichoderma reesei estExt_GeneWisePlus.C_210250 N 0.763
estExt_fgenesh1_pg.C_40107 Trichoderma atroviride estExt_fgenesh1_pg.C_40107 N 0.755
MGG_06881 Magnaporthe oryzae MGG_06881 N 0.755
NCU12158 Neurospora crassa NCU12158 N 0.748
estExt_fgenesh1_pg.C_10265 Neurospora tetrasperma estExt_fgenesh1_pg.C_10265 N 0.748
estExt_Genewise1Plus.C_230018 Trichoderma virens estExt_Genewise1Plus.C_230018 N 0.748
CHGG_07099 Chaetomium globosum CHGG_07099 N 0.748
estExt_Genewise1Plus.C_70091 Cryphonectria parasitica estExt_Genewise1Plus.C_70091 N 0.748
estExt_fgenesh3_pm.C_10926 Neurospora discreta estExt_fgenesh3_pm.C_10926 N 0.748
HCAG_03640 Histoplasma capsulatum HCAG_03640 N 0.741
VDBG_00519 Verticillium albo atrum VDBG_00519 N 0.741
gw1.3.2310.1 Myceliophthora thermophila gw1.3.2310.1 N 0.741
CIMG_00990 Coccidioides immitis CIMG_00990 N 0.741
Pa_2_12560 Podospora anserina Pa_2_12560 N 0.741
BC1G_12993 Botrytis cinerea BC1G_12993 N 0.741
GLRG_03331 Colletotrichum graminicola GLRG_03331 N 0.741
FVEG_02942 Fusarium verticillioides FVEG_02942 N 0.741
CPSG_02224 Coccidioides posadasii CPSG_02224 N 0.741
UREG_00938 Uncinocarpus reesii UREG_00938 N 0.741
FGSG_13728 Fusarium graminearum FGSG_13728 N 0.741
estExt_Genewise1.C_23240 Thielavia terrestris estExt_Genewise1.C_23240 N 0.741
FOXG_05191 Fusarium oxysporum FOXG_05191 N 0.741
Pc22g08010 Penicillium chrysogenum Pc22g08010 N 0.734
BDBG_05401 Blastomyces dermatitidis BDBG_05401 N 0.734
AO090001000725 Aspergillus oryzae CADAORAG00000662 N 0.727
SS1G_05220 Sclerotinia sclerotiorum SS1G_05220 N 0.727
fgenesh1_pg.00082_#_116 Aspergillus carbonarius fgenesh1_pg.00082_#_116 N 0.727
ATEG_06805 Aspergillus terreus CADATEAG00006229 N 0.727
An02g14690 Aspergillus niger CADANGAG00002994 N 0.727
AFLA_130230 Aspergillus flavus CADAFLAG00010081 N 0.727
ANIA_10941 Aspergillus nidulans CADANIAG00000536 N 0.727
estExt_Genewise1Plus.C_240153 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_240153 N 0.719
e_gw1.5.1166.1 Nectria haematococca e_gw1.5.1166.1 N 0.719
PMAA_028640 Penicillium marneffei PMAA_028640 N 0.719
GSTUMT00005496001 Tuber melanosporum GSTUMT00005496001 N 0.719
AFUA_2G06090 Aspergillus fumigatus CADAFUAG00003703 N 0.719
MCYG_04652 Microsporum canis MCYG_04652 N 0.712
PredSwiss_ASS2010_857.1 Pneumocystis carinii PredSwiss_ASS2010_857.1 N 0.712
NFIA_082870 Neosartorya fischeri CADNFIAG00006872 N 0.712
ARB_05069 Arthroderma benhamiae ARB_05069 N 0.712
TERG_03265 Trichophyton rubrum TERG_03265 N 0.712
AB01113.1 Alternaria brassicicola AB01113.1 N 0.712
ACLA_068230 Aspergillus clavatus CADACLAG00007015 N 0.705