estExt_fgenesh1_pg.C_40107 (Trichoderma atroviride)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_pg.C_40107 T50588_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_40107 RRM 1 69
estExt_fgenesh1_pg.C_40107 RRM 85 153

Links

Other RRM family RBPs
Other Trichoderma atroviride RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_GeneWisePlus.C_210250 Trichoderma reesei estExt_GeneWisePlus.C_210250 N 0.993
estExt_Genewise1Plus.C_230018 Trichoderma virens estExt_Genewise1Plus.C_230018 N 0.978
FOXG_05191 Fusarium oxysporum FOXG_05191 N 0.971
FVEG_02942 Fusarium verticillioides FVEG_02942 N 0.971
FGSG_13728 Fusarium graminearum FGSG_13728 N 0.964
e_gw1.5.1166.1 Nectria haematococca e_gw1.5.1166.1 N 0.964
GLRG_03331 Colletotrichum graminicola GLRG_03331 N 0.928
CHGG_07099 Chaetomium globosum CHGG_07099 N 0.920
VDBG_00519 Verticillium albo atrum VDBG_00519 N 0.920
gw1.3.2310.1 Myceliophthora thermophila gw1.3.2310.1 N 0.913
estExt_fgenesh1_pg.C_10265 Neurospora tetrasperma estExt_fgenesh1_pg.C_10265 N 0.913
estExt_fgenesh3_pm.C_10926 Neurospora discreta estExt_fgenesh3_pm.C_10926 N 0.913
estExt_Genewise1.C_23240 Thielavia terrestris estExt_Genewise1.C_23240 N 0.913
NCU12158 Neurospora crassa NCU12158 N 0.913
Pa_2_12560 Podospora anserina Pa_2_12560 N 0.906
MGG_06881 Magnaporthe oryzae MGG_06881 N 0.877
estExt_Genewise1Plus.C_70091 Cryphonectria parasitica estExt_Genewise1Plus.C_70091 N 0.870
BC1G_12993 Botrytis cinerea BC1G_12993 N 0.848
SS1G_05220 Sclerotinia sclerotiorum SS1G_05220 N 0.848
UREG_00938 Uncinocarpus reesii UREG_00938 N 0.841
CIMG_00990 Coccidioides immitis CIMG_00990 N 0.826
CPSG_02224 Coccidioides posadasii CPSG_02224 N 0.826
HCAG_03640 Histoplasma capsulatum HCAG_03640 N 0.819
Pc22g08010 Penicillium chrysogenum Pc22g08010 N 0.812
An02g14690 Aspergillus niger CADANGAG00002994 N 0.812
BDBG_05401 Blastomyces dermatitidis BDBG_05401 N 0.812
AO090001000725 Aspergillus oryzae CADAORAG00000662 N 0.812
ATEG_06805 Aspergillus terreus CADATEAG00006229 N 0.812
AFLA_130230 Aspergillus flavus CADAFLAG00010081 N 0.812
ANIA_10941 Aspergillus nidulans CADANIAG00000536 N 0.804
GSTUMT00005496001 Tuber melanosporum GSTUMT00005496001 N 0.799
fgenesh1_pg.00082_#_116 Aspergillus carbonarius fgenesh1_pg.00082_#_116 N 0.797
TERG_03265 Trichophyton rubrum TERG_03265 N 0.790
ARB_05069 Arthroderma benhamiae ARB_05069 N 0.790
PMAA_028640 Penicillium marneffei PMAA_028640 N 0.790
MCYG_04652 Microsporum canis MCYG_04652 N 0.790
AFUA_2G06090 Aspergillus fumigatus CADAFUAG00003703 N 0.783
TEQG_02438 Trichophyton equinum TEQG_02438 N 0.775
estExt_Genewise1Plus.C_240153 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_240153 N 0.775
NFIA_082870 Neosartorya fischeri CADNFIAG00006872 N 0.775
ACLA_068230 Aspergillus clavatus CADACLAG00007015 N 0.768
SPOG_01457 Schizosaccharomyces cryophilus SPOG_01457 N 0.763
AB01113.1 Alternaria brassicicola AB01113.1 N 0.761
SJAG_03853 Schizosaccharomyces japonicus SJAG_03853 N 0.755
SOCG_02545 Schizosaccharomyces octosporus SOCG_02545 N 0.755
TRV_06675 Trichophyton verrucosum TRV_06675 N 0.754
SPBC660.15 Schizosaccharomyces pombe SPBC660.15 N 0.748
gw1.6.1353.1 Mycosphaerella graminicola gw1.6.1353.1 N 0.727