SS1G_05220 (Sclerotinia sclerotiorum)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 SS1G_05220 T30975_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
SS1T_05220 RRM 19 87
SS1T_05220 RRM 137 205

Links

Other RRM family RBPs
Other Sclerotinia sclerotiorum RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BC1G_12993 Botrytis cinerea BC1G_12993 N 0.971
UREG_00938 Uncinocarpus reesii UREG_00938 N 0.899
CIMG_00990 Coccidioides immitis CIMG_00990 N 0.891
CPSG_02224 Coccidioides posadasii CPSG_02224 N 0.891
HCAG_03640 Histoplasma capsulatum HCAG_03640 N 0.884
BDBG_05401 Blastomyces dermatitidis BDBG_05401 N 0.877
AO090001000725 Aspergillus oryzae CADAORAG00000662 N 0.862
ATEG_06805 Aspergillus terreus CADATEAG00006229 N 0.862
ANIA_10941 Aspergillus nidulans CADANIAG00000536 N 0.862
AFLA_130230 Aspergillus flavus CADAFLAG00010081 N 0.862
CHGG_07099 Chaetomium globosum CHGG_07099 N 0.855
An02g14690 Aspergillus niger CADANGAG00002994 N 0.855
estExt_fgenesh3_pm.C_10926 Neurospora discreta estExt_fgenesh3_pm.C_10926 N 0.848
estExt_Genewise1.C_23240 Thielavia terrestris estExt_Genewise1.C_23240 N 0.848
estExt_fgenesh1_pg.C_40107 Trichoderma atroviride estExt_fgenesh1_pg.C_40107 N 0.848
fgenesh1_pg.00082_#_116 Aspergillus carbonarius fgenesh1_pg.00082_#_116 N 0.848
estExt_Genewise1Plus.C_230018 Trichoderma virens estExt_Genewise1Plus.C_230018 N 0.848
gw1.3.2310.1 Myceliophthora thermophila gw1.3.2310.1 N 0.848
NCU12158 Neurospora crassa NCU12158 N 0.848
e_gw1.5.1166.1 Nectria haematococca e_gw1.5.1166.1 N 0.848
estExt_fgenesh1_pg.C_10265 Neurospora tetrasperma estExt_fgenesh1_pg.C_10265 N 0.848
Pc22g08010 Penicillium chrysogenum Pc22g08010 N 0.841
ARB_05069 Arthroderma benhamiae ARB_05069 N 0.841
TEQG_02438 Trichophyton equinum TEQG_02438 N 0.841
TERG_03265 Trichophyton rubrum TERG_03265 N 0.841
MCYG_04652 Microsporum canis MCYG_04652 N 0.841
Pa_2_12560 Podospora anserina Pa_2_12560 N 0.841
estExt_GeneWisePlus.C_210250 Trichoderma reesei estExt_GeneWisePlus.C_210250 N 0.841
FVEG_02942 Fusarium verticillioides FVEG_02942 N 0.833
FOXG_05191 Fusarium oxysporum FOXG_05191 N 0.833
PMAA_028640 Penicillium marneffei PMAA_028640 N 0.833
GSTUMT00005496001 Tuber melanosporum GSTUMT00005496001 N 0.827
MGG_06881 Magnaporthe oryzae MGG_06881 N 0.826
FGSG_13728 Fusarium graminearum FGSG_13728 N 0.826
GLRG_03331 Colletotrichum graminicola GLRG_03331 N 0.819
VDBG_00519 Verticillium albo atrum VDBG_00519 N 0.819
estExt_Genewise1Plus.C_70091 Cryphonectria parasitica estExt_Genewise1Plus.C_70091 N 0.812
TRV_06675 Trichophyton verrucosum TRV_06675 N 0.812
estExt_Genewise1Plus.C_240153 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_240153 N 0.804
AB01113.1 Alternaria brassicicola AB01113.1 N 0.797
ACLA_068230 Aspergillus clavatus CADACLAG00007015 N 0.797
NFIA_082870 Neosartorya fischeri CADNFIAG00006872 N 0.797
AFUA_2G06090 Aspergillus fumigatus CADAFUAG00003703 N 0.790
gw1.6.1353.1 Mycosphaerella graminicola gw1.6.1353.1 N 0.777
estExt_Genewise1Plus.C_500038 Mycosphaerella fijiensis estExt_Genewise1Plus.C_500038 N 0.743
TESG_02793 Trichophyton tonsurans TESG_02793 N 0.739
SPOG_01457 Schizosaccharomyces cryophilus SPOG_01457 N 0.734
SOCG_02545 Schizosaccharomyces octosporus SOCG_02545 N 0.727
MGYG_08958 Microsporum gypseum MGYG_08958 N 0.725
SJAG_03853 Schizosaccharomyces japonicus SJAG_03853 N 0.712
SPBC660.15 Schizosaccharomyces pombe SPBC660.15 N 0.705
EAT82933.2 Phaeosphaeria nodorum EAT82933.2 N 0.703