CBG03639 (Caenorhabditis briggsae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CBG03639 T33875_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.714
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CBG03639 RRM 45 114
CBG03639 RRM 213 282

Links

Other RRM family RBPs
Other Caenorhabditis briggsae RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBN10423 Caenorhabditis brenneri CBN10423 I 0.979
msi-1 Caenorhabditis elegans R10E9.1 I 0.964
Minc01924 Meloidogyne incognita Minc01924 I 0.814
AAI69841 Xenopus laevis AAI69841 I 0.729
AAA50004 Xenopus laevis AAA50004 I 0.729
estExt_Genewise1Plus.C_620039 Capitella teleta estExt_Genewise1Plus.C_620039 I 0.729
GH15068 Drosophila grimshawi FBgn0122543 I 0.721
GG15829 Drosophila erecta FBgn0108068 I 0.721
GF24401 Drosophila ananassae FBgn0101395 I 0.721
GM24349 Drosophila sechellia FBgn0179213 I 0.721
Rbp6 Drosophila melanogaster FBgn0260943 I 0.721
GE22169 Drosophila yakuba FBgn0239397 I 0.721
GK18043 Drosophila willistoni FBgn0220042 I 0.721
GD12423 Drosophila simulans FBgn0184155 I 0.721
GI12835 Drosophila mojavensis FBgn0135592 I 0.721
MSI2 Pan troglodytes ENSPTRG00000009437 I 0.721
MSI2 Gorilla gorilla ENSGGOG00000013182 I 0.721
msi2a Danio rerio ENSDARG00000033901 I 0.721
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.721
MSI2 Microcebus murinus ENSMICG00000013598 I 0.721
MSI2 Homo sapiens ENSG00000153944 I 0.721
Msi2 Mus musculus ENSMUSG00000069769 I 0.721
MSI2 Oryctolagus cuniculus ENSOCUG00000010440 I 0.721
gw1.72.166.1 Daphnia pulex gw1.72.166.1 I 0.714
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.714
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.714
msi2b Danio rerio ENSDARG00000032614 I 0.714
MSI1 Homo sapiens ENSG00000135097 D 0.714
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.707
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.707
MSI2 Canis familiaris ENSCAFG00000017418 I 0.707
Msi1 Mus musculus ENSMUSG00000054256 I 0.707
MSI1 Tetraodon nigroviridis ENSTNIG00000011469 I 0.700
MSI1 Gasterosteus aculeatus ENSGACG00000012679 I 0.700
MSI1 Takifugu rubripes ENSTRUG00000016249 I 0.700