msi2b (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000032614 T36121_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.850
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.850
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000050648 RRM 23 92
ENSDARP00000050648 RRM 112 181
ENSDARP00000090967 RRM 23 92
ENSDARP00000090967 RRM 112 181

Links

Other RRM family RBPs
Other Danio rerio RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MSI2 Microcebus murinus ENSMICG00000013598 I 0.986
MSI2 Gorilla gorilla ENSGGOG00000013182 I 0.986
MSI2 Oryctolagus cuniculus ENSOCUG00000010440 I 0.986
MSI2 Pan troglodytes ENSPTRG00000009437 I 0.986
MSI2 Homo sapiens ENSG00000153944 I 0.986
Msi2 Mus musculus ENSMUSG00000069769 I 0.986
AAA50004 Xenopus laevis AAA50004 I 0.971
AAI69841 Xenopus laevis AAI69841 I 0.971
msi2a Danio rerio ENSDARG00000033901 I 0.957
MSI2 Canis familiaris ENSCAFG00000017418 I 0.943
LOC100390978 Callithrix jacchus ENSCJAG00000013998 I 0.914
MSI2 Pteropus vampyrus ENSPVAG00000017053 I 0.893
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.857
MSI1 Homo sapiens ENSG00000135097 D 0.850
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.850
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.850
MSI1 Takifugu rubripes ENSTRUG00000016249 I 0.850
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.850
MSI1 Tetraodon nigroviridis ENSTNIG00000011469 I 0.850
MSI1 Gasterosteus aculeatus ENSGACG00000012679 I 0.850
msi1 Xenopus tropicalis ENSXETG00000012216 I 0.843
CBF67566 Xenopus laevis CBF67566 I 0.843
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.843
AAH82667 Xenopus laevis AAH82667 I 0.843
CBU92439 Xenopus laevis CBU92439 I 0.843
AAA49920 Xenopus laevis AAA49920 I 0.843
estExt_Genewise1Plus.C_620039 Capitella teleta estExt_Genewise1Plus.C_620039 I 0.843
Msi1 Mus musculus ENSMUSG00000054256 I 0.843
AAH84959 Xenopus laevis AAH84959 I 0.836
AAA49919 Xenopus laevis AAA49919 I 0.836
MSI1 Takifugu rubripes ENSTRUG00000015636 I 0.836
MSI1 Canis familiaris ENSCAFG00000010283 I 0.831
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.829
MSI1 Dasypus novemcinctus ENSDNOG00000005713 I 0.829
gw1.72.166.1 Daphnia pulex gw1.72.166.1 I 0.821
MSI2 Macaca mulatta ENSMMUG00000002069 I 0.818
MSI2 Bos taurus ENSBTAG00000004406 N 0.814
Rbp6 Drosophila melanogaster FBgn0260943 I 0.800
msi1 Danio rerio ENSDARG00000010710 I 0.800
GG15829 Drosophila erecta FBgn0108068 I 0.800
GI12835 Drosophila mojavensis FBgn0135592 I 0.800
GH15068 Drosophila grimshawi FBgn0122543 I 0.800
GF24401 Drosophila ananassae FBgn0101395 I 0.800
GD12423 Drosophila simulans FBgn0184155 I 0.800
GM24349 Drosophila sechellia FBgn0179213 I 0.800
GK18043 Drosophila willistoni FBgn0220042 I 0.800
GE22169 Drosophila yakuba FBgn0239397 I 0.800
MSI1 Oryctolagus cuniculus ENSOCUG00000027716 I 0.786
LOC100070744 Equus caballus ENSECAG00000011435 I 0.786
MSI1 Macaca mulatta ENSMMUG00000031527 I 0.779
Ame_R019333 Ailuropoda melanoleuca Ame_R019333 I 0.779
MSI1 Felis catus ENSFCAG00000011007 I 0.779
MSI1 Echinops telfairi ENSETEG00000004756 I 0.771
Msi1 Rattus norvegicus ENSRNOG00000001156 I 0.771
MSI1 Pteropus vampyrus ENSPVAG00000002225 I 0.764
LOC100053469 Equus caballus ENSECAG00000017526 I 0.750
AGAP006656 Anopheles gambiae AGAP006656 N 0.750
MSI1 Pan troglodytes ENSPTRG00000005531 I 0.750
nasonia_NCBI_hmm598804 Nasonia vitripennis nasonia_NCBI_hmm598804 N 0.743
msi-1 Caenorhabditis elegans R10E9.1 I 0.729
Minc01924 Meloidogyne incognita Minc01924 I 0.721
MSI1 Gorilla gorilla ENSGGOG00000010328 I 0.721
CBN10423 Caenorhabditis brenneri CBN10423 I 0.721
CBG03639 Caenorhabditis briggsae CBG03639 I 0.714
MSI2 Cavia porcellus ENSCPOG00000008752 N 0.714
MSI2 Tarsius syrichta ENSTSYG00000011839 N 0.700