msi-1 (Caenorhabditis elegans)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 R10E9.1 T45866_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.729
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
R10E9.1.1 RRM 47 116
R10E9.1.1 RRM 136 205
R10E9.1.2 RRM 47 116
R10E9.1.2 RRM 136 205

Links

Other RRM family RBPs
Other Caenorhabditis elegans RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBN10423 Caenorhabditis brenneri CBN10423 I 0.971
CBG03639 Caenorhabditis briggsae CBG03639 I 0.964
Minc01924 Meloidogyne incognita Minc01924 I 0.829
estExt_Genewise1Plus.C_620039 Capitella teleta estExt_Genewise1Plus.C_620039 I 0.750
AAA50004 Xenopus laevis AAA50004 I 0.743
AAI69841 Xenopus laevis AAI69841 I 0.743
MSI2 Pan troglodytes ENSPTRG00000009437 I 0.736
GF24401 Drosophila ananassae FBgn0101395 I 0.736
MSI2 Oryctolagus cuniculus ENSOCUG00000010440 I 0.736
Msi2 Mus musculus ENSMUSG00000069769 I 0.736
MSI2 Gorilla gorilla ENSGGOG00000013182 I 0.736
MSI2 Microcebus murinus ENSMICG00000013598 I 0.736
GG15829 Drosophila erecta FBgn0108068 I 0.736
GI12835 Drosophila mojavensis FBgn0135592 I 0.736
GD12423 Drosophila simulans FBgn0184155 I 0.736
GK18043 Drosophila willistoni FBgn0220042 I 0.736
GM24349 Drosophila sechellia FBgn0179213 I 0.736
Rbp6 Drosophila melanogaster FBgn0260943 I 0.736
GE22169 Drosophila yakuba FBgn0239397 I 0.736
GH15068 Drosophila grimshawi FBgn0122543 I 0.736
MSI2 Homo sapiens ENSG00000153944 I 0.736
msi2a Danio rerio ENSDARG00000033901 I 0.736
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.736
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.729
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.729
msi2b Danio rerio ENSDARG00000032614 I 0.729
MSI1 Homo sapiens ENSG00000135097 D 0.729
gw1.72.166.1 Daphnia pulex gw1.72.166.1 I 0.729
Msi1 Mus musculus ENSMUSG00000054256 I 0.721
MSI2 Canis familiaris ENSCAFG00000017418 I 0.721
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.721
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.721
MSI1 Takifugu rubripes ENSTRUG00000016249 I 0.714
MSI1 Tetraodon nigroviridis ENSTNIG00000011469 I 0.714
MSI1 Gasterosteus aculeatus ENSGACG00000012679 I 0.714
MSI1 Canis familiaris ENSCAFG00000010283 I 0.711
MSI1 Dasypus novemcinctus ENSDNOG00000005713 I 0.707
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.707
msi1 Xenopus tropicalis ENSXETG00000012216 I 0.700
AAA49920 Xenopus laevis AAA49920 I 0.700
AAH82667 Xenopus laevis AAH82667 I 0.700
CBF67566 Xenopus laevis CBF67566 I 0.700
CBU92439 Xenopus laevis CBU92439 I 0.700