CBN10423 (Caenorhabditis brenneri)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CBN10423 T34021_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.721
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CBN10423 RRM 36 105
CBN10423 RRM 125 194

Links

Other RRM family RBPs
Other Caenorhabditis brenneri RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBG03639 Caenorhabditis briggsae CBG03639 I 0.979
msi-1 Caenorhabditis elegans R10E9.1 I 0.971
Minc01924 Meloidogyne incognita Minc01924 I 0.821
estExt_Genewise1Plus.C_620039 Capitella teleta estExt_Genewise1Plus.C_620039 I 0.736
AAI69841 Xenopus laevis AAI69841 I 0.736
AAA50004 Xenopus laevis AAA50004 I 0.736
GF24401 Drosophila ananassae FBgn0101395 I 0.729
MSI2 Oryctolagus cuniculus ENSOCUG00000010440 I 0.729
GE22169 Drosophila yakuba FBgn0239397 I 0.729
MSI2 Pan troglodytes ENSPTRG00000009437 I 0.729
Rbp6 Drosophila melanogaster FBgn0260943 I 0.729
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.729
Msi2 Mus musculus ENSMUSG00000069769 I 0.729
MSI2 Gorilla gorilla ENSGGOG00000013182 I 0.729
GI12835 Drosophila mojavensis FBgn0135592 I 0.729
GM24349 Drosophila sechellia FBgn0179213 I 0.729
GD12423 Drosophila simulans FBgn0184155 I 0.729
msi2a Danio rerio ENSDARG00000033901 I 0.729
GH15068 Drosophila grimshawi FBgn0122543 I 0.729
MSI2 Microcebus murinus ENSMICG00000013598 I 0.729
GG15829 Drosophila erecta FBgn0108068 I 0.729
MSI2 Homo sapiens ENSG00000153944 I 0.729
GK18043 Drosophila willistoni FBgn0220042 I 0.729
gw1.72.166.1 Daphnia pulex gw1.72.166.1 I 0.721
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.721
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.721
msi2b Danio rerio ENSDARG00000032614 I 0.721
MSI1 Homo sapiens ENSG00000135097 D 0.721
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.714
MSI2 Canis familiaris ENSCAFG00000017418 I 0.714
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.714
Msi1 Mus musculus ENSMUSG00000054256 I 0.714
MSI1 Takifugu rubripes ENSTRUG00000016249 I 0.707
MSI1 Gasterosteus aculeatus ENSGACG00000012679 I 0.707
MSI1 Tetraodon nigroviridis ENSTNIG00000011469 I 0.707
MSI1 Canis familiaris ENSCAFG00000010283 I 0.704
MSI1 Dasypus novemcinctus ENSDNOG00000005713 I 0.700
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.700