gw1.72.166.1 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.72.166.1 T53354_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.786
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.786
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.72.166.1 RRM 4 73
gw1.72.166.1 RRM 93 162

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

57 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GK18043 Drosophila willistoni FBgn0220042 I 0.821
GF24401 Drosophila ananassae FBgn0101395 I 0.821
GE22169 Drosophila yakuba FBgn0239397 I 0.821
GH15068 Drosophila grimshawi FBgn0122543 I 0.821
GD12423 Drosophila simulans FBgn0184155 I 0.821
GM24349 Drosophila sechellia FBgn0179213 I 0.821
GI12835 Drosophila mojavensis FBgn0135592 I 0.821
estExt_Genewise1Plus.C_620039 Capitella teleta estExt_Genewise1Plus.C_620039 I 0.821
GG15829 Drosophila erecta FBgn0108068 I 0.821
msi2b Danio rerio ENSDARG00000032614 I 0.821
Rbp6 Drosophila melanogaster FBgn0260943 I 0.821
MSI2 Homo sapiens ENSG00000153944 I 0.807
MSI2 Gorilla gorilla ENSGGOG00000013182 I 0.807
MSI2 Oryctolagus cuniculus ENSOCUG00000010440 I 0.807
Msi2 Mus musculus ENSMUSG00000069769 I 0.807
MSI2 Pan troglodytes ENSPTRG00000009437 I 0.807
MSI2 Microcebus murinus ENSMICG00000013598 I 0.807
nasonia_NCBI_hmm598804 Nasonia vitripennis nasonia_NCBI_hmm598804 N 0.807
AAI69841 Xenopus laevis AAI69841 I 0.800
AAA50004 Xenopus laevis AAA50004 I 0.800
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.793
Msi1 Mus musculus ENSMUSG00000054256 I 0.786
msi1 Xenopus tropicalis ENSXETG00000012216 I 0.786
MSI1 Homo sapiens ENSG00000135097 D 0.786
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.786
msi2a Danio rerio ENSDARG00000033901 I 0.786
AAH82667 Xenopus laevis AAH82667 I 0.786
AAA49920 Xenopus laevis AAA49920 I 0.786
CBU92439 Xenopus laevis CBU92439 I 0.786
CBF67566 Xenopus laevis CBF67566 I 0.786
MSI2 Canis familiaris ENSCAFG00000017418 I 0.786
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.786
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.786
AAA49919 Xenopus laevis AAA49919 I 0.779
AAH84959 Xenopus laevis AAH84959 I 0.779
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.779
AGAP006656 Anopheles gambiae AGAP006656 N 0.779
MSI1 Tetraodon nigroviridis ENSTNIG00000011469 I 0.771
MSI1 Takifugu rubripes ENSTRUG00000016249 I 0.771
MSI1 Gasterosteus aculeatus ENSGACG00000012679 I 0.771
MSI1 Canis familiaris ENSCAFG00000010283 I 0.768
MSI1 Dasypus novemcinctus ENSDNOG00000005713 I 0.764
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.764
MSI1 Takifugu rubripes ENSTRUG00000015636 I 0.764
LOC100390978 Callithrix jacchus ENSCJAG00000013998 I 0.743
MSI2 Pteropus vampyrus ENSPVAG00000017053 I 0.729
msi-1 Caenorhabditis elegans R10E9.1 I 0.729
MSI1 Oryctolagus cuniculus ENSOCUG00000027716 I 0.721
CBN10423 Caenorhabditis brenneri CBN10423 I 0.721
CBG03639 Caenorhabditis briggsae CBG03639 I 0.714
Ame_R019333 Ailuropoda melanoleuca Ame_R019333 I 0.714
MSI1 Macaca mulatta ENSMMUG00000031527 I 0.714
Msi1 Rattus norvegicus ENSRNOG00000001156 I 0.714
MSI1 Felis catus ENSFCAG00000011007 I 0.707
Minc01924 Meloidogyne incognita Minc01924 I 0.707
msi1 Danio rerio ENSDARG00000010710 I 0.707
MSI1 Echinops telfairi ENSETEG00000004756 I 0.700