CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NONO
(
Macropus eugenii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMEUG00000004294
T38186_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
NONO
M309_0.6
Homo sapiens
Sequence logo not available
GAGAGGAAC
SELEX
Cook et al.(2011)
490_12403470
0.985
NONO
M307_0.6
Homo sapiens
AGGGA
SELEX
Cook et al.(2011)
488_9001221
0.985
SFPQ
M308_0.6
Homo sapiens
Sequence logo not available
UGGAGAGGAAC
SELEX
Cook et al.(2011)
489_12403470
0.759
SFPQ
M168_0.6
Homo sapiens
KURRUKK
RNAcompete
Ray et al.(2013)
RNCMPT00177
0.759
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMEUP00000003919
RRM
76
140
LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLR
ENSMEUP00000003919
RRM
150
217
LTVRNLPQFVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTT
Links
Other
RRM
family RBPs
Other
Macropus eugenii
RBPs
79 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NONO
Monodelphis domestica
ENSMODG00000004445
I
0.992
NONO
Pteropus vampyrus
ENSPVAG00000016503
I
0.985
Q2KJ42_BOVIN
Bos taurus
ENSBTAG00000012152
I
0.985
XR_025068.1
Pan troglodytes
ENSPTRG00000022010
I
0.985
NONO
Equus caballus
ENSECAG00000008502
I
0.985
NONO
Erinaceus europaeus
ENSEEUG00000014404
I
0.985
ENSPPYG00000020451
Pongo pygmaeus
ENSPPYG00000020451
I
0.985
NONO
Spermophilus tridecemlineatus
ENSSTOG00000015869
I
0.985
TAF1
Callithrix jacchus
ENSCJAG00000013390
I
0.985
LOC607081
Canis familiaris
ENSCAFG00000003207
I
0.985
Ame_R017809
Ailuropoda melanoleuca
Ame_R017809
I
0.985
NONO
Vicugna pacos
ENSVPAG00000002272
I
0.985
ENSCAFG00000017071
Canis familiaris
ENSCAFG00000017071
I
0.985
NONO
Procavia capensis
ENSPCAG00000002541
I
0.985
NONO
Tursiops truncatus
ENSTTRG00000009605
I
0.985
ENSCPOG00000010263
Cavia porcellus
ENSCPOG00000010263
I
0.985
Nono
Rattus norvegicus
ENSRNOG00000003689
I
0.985
NONO
Loxodonta africana
ENSLAFG00000013422
I
0.985
LOC697263
Macaca mulatta
ENSMMUG00000020481
I
0.985
NONO
Microcebus murinus
ENSMICG00000000232
I
0.985
NONO
Gorilla gorilla
ENSGGOG00000006194
I
0.985
Nono
Mus musculus
ENSMUSG00000031311
I
0.985
NONO
Homo sapiens
ENSG00000147140
D
0.985
ENSOCUG00000021848
Oryctolagus cuniculus
ENSOCUG00000021848
I
0.985
NONO
Otolemur garnettii
ENSOGAG00000004834
I
0.985
ENSCPOG00000023605
Cavia porcellus
ENSCPOG00000023605
I
0.977
NONO
Sorex araneus
ENSSARG00000007959
I
0.977
Q5ZIZ5_CHICK
Gallus gallus
ENSGALG00000005507
I
0.970
NONO
Meleagris gallopavo
ENSMGAG00000008869
I
0.970
NONO
Taeniopygia guttata
ENSTGUG00000007048
I
0.970
NONO
Myotis lucifugus
ENSMLUG00000002489
I
0.955
ENSCJAG00000003136
Callithrix jacchus
ENSCJAG00000003136
I
0.955
NONO
Anolis carolinensis
ENSACAG00000015026
I
0.917
ENSCAFG00000013766
Canis familiaris
ENSCAFG00000013766
I
0.865
AAH45128
Xenopus laevis
AAH45128
I
0.835
BAE54372
Xenopus laevis
BAE54372
I
0.835
nono
Xenopus tropicalis
ENSXETG00000020868
I
0.835
ENSCPOG00000026604
Cavia porcellus
ENSCPOG00000026604
I
0.789
SFPQ
Bos taurus
ENSBTAG00000016328
I
0.759
SFPQ
Gorilla gorilla
ENSGGOG00000026354
I
0.759
LOC100069588
Equus caballus
ENSECAG00000000642
I
0.759
SFPQ
Homo sapiens
ENSG00000116560
D
0.759
SFPQ
Cavia porcellus
ENSCPOG00000015018
I
0.759
SFPQ
Echinops telfairi
ENSETEG00000001095
I
0.759
SFPQ
Loxodonta africana
ENSLAFG00000015951
I
0.759
LOC100386194
Callithrix jacchus
ENSCJAG00000001431
I
0.759
ENSCAFG00000003595
Canis familiaris
ENSCAFG00000003595
I
0.759
sfpq
Xenopus tropicalis
ENSXETG00000009682
I
0.759
SFPQ
Pan troglodytes
ENSPTRG00000000518
I
0.759
Sfpq
Mus musculus
ENSMUSG00000028820
I
0.759
SFPQ
Procavia capensis
ENSPCAG00000006164
I
0.759
SFPQ
Ochotona princeps
ENSOPRG00000013696
I
0.759
SFPQ
Oryctolagus cuniculus
ENSOCUG00000001877
I
0.759
ENSPPYG00000001560
Pongo pygmaeus
ENSPPYG00000001560
I
0.759
SFPQ
Microcebus murinus
ENSMICG00000011755
I
0.759
Ame_R005060
Ailuropoda melanoleuca
Ame_R005060
I
0.759
Sfpq
Rattus norvegicus
ENSRNOG00000013154
I
0.759
SFPQ
Vicugna pacos
ENSVPAG00000006960
I
0.759
SFPQ
Tursiops truncatus
ENSTTRG00000013930
I
0.759
SFPQ
Spermophilus tridecemlineatus
ENSSTOG00000014004
I
0.759
ENSTRUG00000003783
Takifugu rubripes
ENSTRUG00000003783
I
0.752
ENSMEUG00000014082
Macropus eugenii
ENSMEUG00000014082
I
0.752
ENSMODG00000017937
Monodelphis domestica
ENSMODG00000017937
I
0.752
ENSOANG00000008789
Ornithorhynchus anatinus
ENSOANG00000008789
I
0.744
SFPQ
Taeniopygia guttata
ENSTGUG00000001722
I
0.744
Q91017_CHICK
Gallus gallus
ENSGALG00000002514
I
0.744
Sfpq
Dipodomys ordii
ENSDORG00000008109
I
0.737
XM_532566.2
Canis familiaris
ENSCAFG00000018271
I
0.737
ENSTNIG00000011331
Tetraodon nigroviridis
ENSTNIG00000011331
I
0.737
ENSACAG00000013307
Anolis carolinensis
ENSACAG00000013307
I
0.729
nono
Danio rerio
ENSDARG00000020482
I
0.729
SFPQ
Tupaia belangeri
ENSTBEG00000006238
I
0.722
ENSGACG00000002034
Gasterosteus aculeatus
ENSGACG00000002034
I
0.722
ENSTSYG00000009311
Tarsius syrichta
ENSTSYG00000009311
I
0.714
ENSORLG00000007459
Oryzias latipes
ENSORLG00000007459
I
0.714
NONO
Takifugu rubripes
ENSTRUG00000005554
I
0.707
NONO
Gasterosteus aculeatus
ENSGACG00000011824
I
0.707
Nono
Dipodomys ordii
ENSDORG00000009294
I
0.707
sfpq
Danio rerio
ENSDARG00000011564
I
0.707