ENSORLG00000007459 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000007459 T40148_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.805
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.805
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.712
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.712
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000009351 RRM 295 359
ENSORLP00000009351 RRM 369 434
ENSORLP00000009352 RRM 318 382
ENSORLP00000009352 RRM 392 457

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

100 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.908
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.908
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.895
sfpq Danio rerio ENSDARG00000011564 I 0.832
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.826
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.826
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.818
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.812
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.812
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.805
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.805
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.805
SFPQ Bos taurus ENSBTAG00000016328 I 0.805
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.805
SFPQ Homo sapiens ENSG00000116560 D 0.805
Sfpq Mus musculus ENSMUSG00000028820 I 0.805
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.805
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.805
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.805
SFPQ Microcebus murinus ENSMICG00000011755 I 0.805
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.805
SFPQ Echinops telfairi ENSETEG00000001095 I 0.805
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.805
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.805
LOC100069588 Equus caballus ENSECAG00000000642 I 0.805
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.805
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.805
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.805
SFPQ Procavia capensis ENSPCAG00000006164 I 0.805
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.805
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.805
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.802
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.782
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.774
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.773
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.765
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.756
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.756
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.756
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.744
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.742
PSPC1 Sorex araneus ENSSARG00000000888 I 0.740
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.740
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.740
PSPC1 Homo sapiens ENSG00000121390 I 0.740
PSPC1 Macropus eugenii ENSMEUG00000000476 I 0.740
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.740
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.740
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.740
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.740
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.740
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.740
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.740
ENSPPYG00000005186 Pongo pygmaeus ENSPPYG00000005186 I 0.740
Ame_R014248 Ailuropoda melanoleuca Ame_R014248 I 0.740
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.740
Pspc1 Mus musculus ENSMUSG00000021938 I 0.740
PSPC1_BOVIN Bos taurus ENSBTAG00000003934 I 0.733
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.733
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.733
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.733
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.733
Q5ZIZ5_CHICK Gallus gallus ENSGALG00000005507 I 0.725
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.725
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.725
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.725
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.725
NONO Monodelphis domestica ENSMODG00000004445 I 0.720
NONO Macropus eugenii ENSMEUG00000004294 I 0.714
NONO Otolemur garnettii ENSOGAG00000004834 I 0.712
NONO Procavia capensis ENSPCAG00000002541 I 0.712
Nono Mus musculus ENSMUSG00000031311 I 0.712
ENSPPYG00000020451 Pongo pygmaeus ENSPPYG00000020451 I 0.712
LOC697263 Macaca mulatta ENSMMUG00000020481 I 0.712
XR_025068.1 Pan troglodytes ENSPTRG00000022010 I 0.712
NONO Microcebus murinus ENSMICG00000000232 I 0.712
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.712
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.712
NONO Loxodonta africana ENSLAFG00000013422 I 0.712
NONO Vicugna pacos ENSVPAG00000002272 I 0.712
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.712
TAF1 Callithrix jacchus ENSCJAG00000013390 I 0.712
LOC607081 Canis familiaris ENSCAFG00000003207 I 0.712
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.712
Ame_R017809 Ailuropoda melanoleuca Ame_R017809 I 0.712
NONO Equus caballus ENSECAG00000008502 I 0.712
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.712
NONO Gorilla gorilla ENSGGOG00000006194 I 0.712
NONO Homo sapiens ENSG00000147140 D 0.712
Nono Rattus norvegicus ENSRNOG00000003689 I 0.712
Q2KJ42_BOVIN Bos taurus ENSBTAG00000012152 I 0.712
NONO Tursiops truncatus ENSTTRG00000009605 I 0.712
NONO Anolis carolinensis ENSACAG00000015026 I 0.710
pspc1 Danio rerio ENSDARG00000006621 N 0.710
PSPC1 Felis catus ENSFCAG00000013701 I 0.710
NONO Sorex araneus ENSSARG00000007959 I 0.705
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.705
BAE54372 Xenopus laevis BAE54372 I 0.702
AAH45128 Xenopus laevis AAH45128 I 0.702