Q5ZIZ5_CHICK (Gallus gallus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGALG00000005507 T37643_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.970
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.970
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.744
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.744
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000008824 RRM 76 140
ENSGALP00000008824 RRM 150 215

Links

Other RRM family RBPs
Other Gallus gallus RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NONO Meleagris gallopavo ENSMGAG00000008869 I 1.000
NONO Taeniopygia guttata ENSTGUG00000007048 I 1.000
NONO Monodelphis domestica ENSMODG00000004445 I 0.977
NONO Macropus eugenii ENSMEUG00000004294 I 0.970
NONO Homo sapiens ENSG00000147140 D 0.970
NONO Otolemur garnettii ENSOGAG00000004834 I 0.970
NONO Tursiops truncatus ENSTTRG00000009605 I 0.970
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.970
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.970
NONO Procavia capensis ENSPCAG00000002541 I 0.970
XR_025068.1 Pan troglodytes ENSPTRG00000022010 I 0.970
Nono Rattus norvegicus ENSRNOG00000003689 I 0.970
ENSPPYG00000020451 Pongo pygmaeus ENSPPYG00000020451 I 0.970
NONO Equus caballus ENSECAG00000008502 I 0.970
NONO Vicugna pacos ENSVPAG00000002272 I 0.970
Ame_R017809 Ailuropoda melanoleuca Ame_R017809 I 0.970
NONO Gorilla gorilla ENSGGOG00000006194 I 0.970
LOC607081 Canis familiaris ENSCAFG00000003207 I 0.970
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.970
NONO Loxodonta africana ENSLAFG00000013422 I 0.970
NONO Microcebus murinus ENSMICG00000000232 I 0.970
Q2KJ42_BOVIN Bos taurus ENSBTAG00000012152 I 0.970
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.970
LOC697263 Macaca mulatta ENSMMUG00000020481 I 0.970
Nono Mus musculus ENSMUSG00000031311 I 0.970
TAF1 Callithrix jacchus ENSCJAG00000013390 I 0.970
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.970
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.962
NONO Sorex araneus ENSSARG00000007959 I 0.962
NONO Spermophilus tridecemlineatus ENSSTOG00000015869 I 0.955
NONO Myotis lucifugus ENSMLUG00000002489 I 0.939
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.939
NONO Anolis carolinensis ENSACAG00000015026 I 0.916
BAE54372 Xenopus laevis BAE54372 I 0.863
AAH45128 Xenopus laevis AAH45128 I 0.863
ENSCAFG00000013766 Canis familiaris ENSCAFG00000013766 I 0.863
nono Xenopus tropicalis ENSXETG00000020868 I 0.863
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.786
ENSCPOG00000026604 Cavia porcellus ENSCPOG00000026604 I 0.786
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.763
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.748
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.744
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.744
LOC100069588 Equus caballus ENSECAG00000000642 I 0.744
SFPQ Bos taurus ENSBTAG00000016328 I 0.744
SFPQ Microcebus murinus ENSMICG00000011755 I 0.744
SFPQ Homo sapiens ENSG00000116560 D 0.744
Sfpq Mus musculus ENSMUSG00000028820 I 0.744
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.744
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.744
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.744
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.744
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.744
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.744
SFPQ Procavia capensis ENSPCAG00000006164 I 0.744
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.744
SFPQ Echinops telfairi ENSETEG00000001095 I 0.744
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.744
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.744
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.744
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.744
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.744
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.742
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.742
nono Danio rerio ENSDARG00000020482 I 0.740
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.737
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.737
sfpq Danio rerio ENSDARG00000011564 I 0.733
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.729
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.729
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.727
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.725
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.720
NONO Gasterosteus aculeatus ENSGACG00000011824 I 0.718
NONO Takifugu rubripes ENSTRUG00000005554 I 0.718
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.718
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.718
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.718
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.714
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.712
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.707
pspc1 Danio rerio ENSDARG00000006621 N 0.702