ENSCPOG00000023605 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000023605 T35906_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.992
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.992
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.752
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000016965 RRM 64 128
ENSCPOP00000016965 RRM 138 204

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.992
NONO Otolemur garnettii ENSOGAG00000004834 I 0.992
Ame_R017809 Ailuropoda melanoleuca Ame_R017809 I 0.992
Nono Mus musculus ENSMUSG00000031311 I 0.992
NONO Microcebus murinus ENSMICG00000000232 I 0.992
Q2KJ42_BOVIN Bos taurus ENSBTAG00000012152 I 0.992
NONO Procavia capensis ENSPCAG00000002541 I 0.992
NONO Vicugna pacos ENSVPAG00000002272 I 0.992
Nono Rattus norvegicus ENSRNOG00000003689 I 0.992
NONO Tursiops truncatus ENSTTRG00000009605 I 0.992
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.992
XR_025068.1 Pan troglodytes ENSPTRG00000022010 I 0.992
ENSPPYG00000020451 Pongo pygmaeus ENSPPYG00000020451 I 0.992
LOC607081 Canis familiaris ENSCAFG00000003207 I 0.992
LOC697263 Macaca mulatta ENSMMUG00000020481 I 0.992
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.992
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.992
NONO Equus caballus ENSECAG00000008502 I 0.992
TAF1 Callithrix jacchus ENSCJAG00000013390 I 0.992
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.992
NONO Loxodonta africana ENSLAFG00000013422 I 0.992
NONO Homo sapiens ENSG00000147140 D 0.992
NONO Gorilla gorilla ENSGGOG00000006194 I 0.992
NONO Monodelphis domestica ENSMODG00000004445 I 0.985
NONO Sorex araneus ENSSARG00000007959 I 0.985
NONO Macropus eugenii ENSMEUG00000004294 I 0.977
NONO Spermophilus tridecemlineatus ENSSTOG00000015869 I 0.977
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.962
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.962
Q5ZIZ5_CHICK Gallus gallus ENSGALG00000005507 I 0.962
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.962
NONO Myotis lucifugus ENSMLUG00000002489 I 0.962
NONO Anolis carolinensis ENSACAG00000015026 I 0.909
ENSCAFG00000013766 Canis familiaris ENSCAFG00000013766 I 0.871
AAH45128 Xenopus laevis AAH45128 I 0.826
nono Xenopus tropicalis ENSXETG00000020868 I 0.826
BAE54372 Xenopus laevis BAE54372 I 0.826
ENSCPOG00000026604 Cavia porcellus ENSCPOG00000026604 I 0.795
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.752
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.752
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.752
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.752
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.752
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.752
SFPQ Bos taurus ENSBTAG00000016328 I 0.752
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.752
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.752
SFPQ Microcebus murinus ENSMICG00000011755 I 0.752
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.752
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.752
SFPQ Homo sapiens ENSG00000116560 D 0.752
LOC100069588 Equus caballus ENSECAG00000000642 I 0.752
SFPQ Echinops telfairi ENSETEG00000001095 I 0.752
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.752
Sfpq Mus musculus ENSMUSG00000028820 I 0.752
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.752
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.752
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.752
SFPQ Procavia capensis ENSPCAG00000006164 I 0.752
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.750
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.750
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.750
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.744
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.744
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.742
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.737
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.735
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.729
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.729
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.727
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.727
nono Danio rerio ENSDARG00000020482 I 0.720
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.720
Nono Dipodomys ordii ENSDORG00000009294 I 0.712
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.705