ELAVL1 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000031727 T35712_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.767
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.767
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.767
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.767
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.767
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.767
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000043197 RRM 4 67
ENSCJAP00000043197 RRM 85 153
ENSCJAP00000043197 RRM 222 290

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.807
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.807
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.807
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.807
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.807
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.807
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.807
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.807
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.807
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.807
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.807
ELAVL1 Felis catus ENSFCAG00000014947 I 0.807
ELAVL1 Homo sapiens ENSG00000066044 D 0.807
LOC100060819 Equus caballus ENSECAG00000019459 I 0.807
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.807
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.802
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.802
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.802
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.802
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.802
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.802
Elavl1 Mus musculus ENSMUSG00000040028 I 0.802
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.797
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.797
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.792
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.792
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.788
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.778
Q5U259 Xenopus laevis Q5U259 I 0.774
AAH86269 Xenopus laevis AAH86269 I 0.774
AAA96942 Xenopus laevis AAA96942 I 0.769
AAI16460 Xenopus laevis AAI16460 I 0.731
Q1JQ73 Xenopus laevis Q1JQ73 I 0.731
elavl1 Danio rerio ENSDARG00000038695 I 0.728
ELAVL1 Pteropus vampyrus ENSPVAG00000002299 I 0.727
ELAVL1 Tursiops truncatus ENSTTRG00000010180 I 0.727
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.727
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.724
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.717
hug Danio rerio ENSDARG00000016405 I 0.714
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.712