ELAVL1 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000004559 T42227_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.868
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.868
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.868
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.868
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.868
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.868
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.765
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.765
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.765
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.751
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.751
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.751
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000010843 RRM 21 91
ENSTRUP00000010843 RRM 107 174
ENSTRUP00000010843 RRM 245 315

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

159 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.943
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.888
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.877
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.877
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.877
elavl1 Danio rerio ENSDARG00000038695 I 0.877
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.873
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.868
ELAVL1 Homo sapiens ENSG00000066044 D 0.868
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.868
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.868
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.868
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.868
Elavl1 Mus musculus ENSMUSG00000040028 I 0.868
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.868
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.868
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.868
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.868
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.868
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.868
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.868
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.868
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.868
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.868
ELAVL1 Felis catus ENSFCAG00000014947 I 0.868
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.868
LOC100060819 Equus caballus ENSECAG00000019459 I 0.863
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.863
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.858
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.858
hug Danio rerio ENSDARG00000016405 I 0.858
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.854
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.849
AAH86269 Xenopus laevis AAH86269 I 0.844
Q5U259 Xenopus laevis Q5U259 I 0.844
AAA96942 Xenopus laevis AAA96942 I 0.840
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.825
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.815
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.810
AAI16460 Xenopus laevis AAI16460 I 0.802
Q1JQ73 Xenopus laevis Q1JQ73 I 0.802
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.769
elavl3 Danio rerio ENSDARG00000014420 I 0.768
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.768
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.768
Q91903 Xenopus laevis Q91903 I 0.765
ELAVL2 Homo sapiens ENSG00000107105 D 0.765
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.765
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.765
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.765
ELAVL2 Equus caballus ENSECAG00000020142 I 0.765
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.765
Elavl2 Mus musculus ENSMUSG00000008489 I 0.765
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.765
AAI70539 Xenopus laevis AAI70539 I 0.765
AAH94189 Xenopus laevis AAH94189 I 0.765
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.765
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.765
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.765
AAA96943 Xenopus laevis AAA96943 I 0.765
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.765
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.765
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.765
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.765
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.765
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.765
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.765
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.765
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.765
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.765
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.765
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.765
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.765
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.764
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.764
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.761
CAA59430 Xenopus laevis CAA59430 I 0.761
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.761
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.759
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.757
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.756
elavl2 Danio rerio ENSDARG00000040732 I 0.756
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.756
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.756
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.755
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.754
Elavl3 Mus musculus ENSMUSG00000003410 I 0.754
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.754
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.754
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.754
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.754
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.754
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.754
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.754
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.754
ELAVL3 Homo sapiens ENSG00000196361 I 0.754
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.754
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.754
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.751
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.751
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.751
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.751
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.751
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.751
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.751
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.751
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.751
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.751
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.751
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.751
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.751
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.751
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.751
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.751
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.751
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.751
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.751
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.751
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.751
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.751
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.751
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.751
AAA96945 Xenopus laevis AAA96945 I 0.751
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.751
AAH99348 Xenopus laevis AAH99348 I 0.751
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.751
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.751
CBF67567 Xenopus laevis CBF67567 I 0.751
CBU92440 Xenopus laevis CBU92440 I 0.751
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.751
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.751
LOC100051268 Equus caballus ENSECAG00000022284 I 0.751
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.751
ELAVL4 Homo sapiens ENSG00000162374 D 0.751
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.751
Elavl4 Mus musculus ENSMUSG00000028546 I 0.751
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.751
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.751
AAA96944 Xenopus laevis AAA96944 I 0.750
Q91584 Xenopus laevis Q91584 I 0.750
AAI69769 Xenopus laevis AAI69769 I 0.750
elavl4 Danio rerio ENSDARG00000045639 I 0.749
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.749
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.746
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.746
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.746
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.739
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.730
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.725
ELAVL1 Cavia porcellus ENSCPOG00000011884 I 0.720
ELAVL1 Tursiops truncatus ENSTTRG00000010180 I 0.717
ELAVL1 Pteropus vampyrus ENSPVAG00000002299 I 0.717
ENSCHOG00000006810 Choloepus hoffmanni ENSCHOG00000006810 I 0.716
ELAVL1 Procavia capensis ENSPCAG00000016012 I 0.716
ELAVL1 Echinops telfairi ENSETEG00000012985 I 0.716
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.716
ELAVL1 Callithrix jacchus ENSCJAG00000031727 I 0.712
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.708
ELAVL1 Sorex araneus ENSSARG00000013091 I 0.703