SRSF6 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000011761 T35841_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.721
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000010577 RRM 4 66
ENSCPOP00000010577 RRM 112 174

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

86 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.946
SRSF6 Homo sapiens ENSG00000124193 I 0.946
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.946
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.946
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.946
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.946
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.938
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.938
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.930
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.930
Srsf6 Mus musculus ENSMUSG00000016921 I 0.930
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.930
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.930
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.930
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.930
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.922
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.915
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.899
srsf6a Danio rerio ENSDARG00000013729 I 0.884
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.884
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.884
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.884
srsf6b Danio rerio ENSDARG00000016783 I 0.868
AAH46668 Xenopus laevis AAH46668 I 0.860
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.853
AAH44265 Xenopus laevis AAH44265 I 0.853
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.822
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.814
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.814
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.814
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.814
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.814
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.814
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.814
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.814
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.814
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.814
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.814
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.814
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.814
SRSF4 Homo sapiens ENSG00000116350 I 0.814
Srsf4 Mus musculus ENSMUSG00000028911 I 0.814
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.814
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.814
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.814
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.814
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.814
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.814
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.806
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.806
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.806
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.806
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.806
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.783
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.767
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.752
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.744
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.744
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.736
Ame_R005284 Ailuropoda melanoleuca Ame_R005284 N 0.729
SRSF6 Sus scrofa ENSSSCG00000007362 N 0.729
SRSF6 Macaca mulatta ENSMMUG00000006742 N 0.729
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.729
GH18528 Drosophila grimshawi FBgn0125995 I 0.721
SRSF6_RABIT Oryctolagus cuniculus ENSOCUG00000009785 N 0.721
GL23543 Drosophila persimilis FBgn0161133 I 0.721
GI22065 Drosophila mojavensis FBgn0144794 I 0.721
GF17608 Drosophila ananassae FBgn0094626 I 0.721
GJ24113 Drosophila virilis FBgn0211197 I 0.721
B52 Drosophila melanogaster FBgn0004587 D 0.721
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.721
GK13948 Drosophila willistoni FBgn0215954 I 0.721
SRSF6 Gallus gallus ENSGALG00000000990 N 0.713
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.713
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.713
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.713
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.713
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.713
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.713
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.705
PHUM290500 Pediculus humanus PHUM290500 I 0.705
SRSF6 Choloepus hoffmanni ENSCHOG00000000561 N 0.705
SRSF6 Otolemur garnettii ENSOGAG00000014468 N 0.705
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.705
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.705
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.705