srsf4 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000014380 T42894_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.705
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000031465 RRM 4 66
ENSXETP00000031465 RRM 110 175
ENSXETP00000031474 RRM 4 66
ENSXETP00000031474 RRM 116 181

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

116 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.845
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.845
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.845
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.845
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.845
Srsf4 Mus musculus ENSMUSG00000028911 I 0.845
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.845
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.845
SRSF4 Homo sapiens ENSG00000116350 I 0.845
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.845
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.845
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.845
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.845
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.845
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.845
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.845
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.845
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.845
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.845
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.845
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.845
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.837
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.837
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.837
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.837
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.837
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.837
srsf6a Danio rerio ENSDARG00000013729 I 0.829
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.829
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.822
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.822
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.822
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.822
SRSF6 Homo sapiens ENSG00000124193 I 0.822
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.822
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.822
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.814
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.814
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.814
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.814
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.814
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.814
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.806
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.806
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.806
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.806
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.806
Srsf6 Mus musculus ENSMUSG00000016921 I 0.806
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.806
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.806
srsf6b Danio rerio ENSDARG00000016783 I 0.806
AAH46668 Xenopus laevis AAH46668 I 0.806
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.798
AAH44265 Xenopus laevis AAH44265 I 0.791
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.783
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.775
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.775
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.752
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.752
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.752
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.744
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.744
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.744
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.729
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.729
ISCW014220 Ixodes scapularis ISCW014220 I 0.729
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.729
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.729
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.729
SRSF4 Gorilla gorilla ENSGGOG00000002444 N 0.729
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.729
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.721
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.721
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.721
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.721
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.721
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.721
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.721
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.721
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.721
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.721
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.721
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.721
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.721
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.721
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.721
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.721
AAH71160 Xenopus laevis AAH71160 I 0.721
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.721
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.721
srsf5b Danio rerio ENSDARG00000027734 I 0.721
SRSF5 Felis catus ENSFCAG00000008848 I 0.721
SRSF5 Homo sapiens ENSG00000100650 D 0.721
LOC100053264 Equus caballus ENSECAG00000026873 I 0.721
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.721
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.721
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.721
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.721
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.721
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.721
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.721
Srsf5 Mus musculus ENSMUSG00000021134 I 0.721
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.721
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.713
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.713
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.713
B52 Drosophila melanogaster FBgn0004587 D 0.705
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.705
AAH44085 Xenopus laevis AAH44085 I 0.705
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.705
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.705
62194 Helobdella robusta 62194 I 0.705
GK13948 Drosophila willistoni FBgn0215954 I 0.705
GF17608 Drosophila ananassae FBgn0094626 I 0.705
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.705