SRSF6 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000003530 T40108_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.736
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000004399 RRM 4 66
ENSORLP00000004399 RRM 117 182

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

122 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.953
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.953
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.953
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.946
SRSF6 Homo sapiens ENSG00000124193 I 0.946
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.946
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.946
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.946
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.946
srsf6a Danio rerio ENSDARG00000013729 I 0.946
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.946
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.946
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.938
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.938
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.938
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.938
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.930
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.930
srsf6b Danio rerio ENSDARG00000016783 I 0.930
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.930
Srsf6 Mus musculus ENSMUSG00000016921 I 0.930
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.922
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.915
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.899
AAH46668 Xenopus laevis AAH46668 I 0.891
AAH44265 Xenopus laevis AAH44265 I 0.884
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.860
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.853
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.853
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.853
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.853
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.853
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.853
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.853
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.853
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.853
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.853
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.853
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.853
Srsf4 Mus musculus ENSMUSG00000028911 I 0.853
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.853
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.853
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.853
SRSF4 Homo sapiens ENSG00000116350 I 0.853
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.853
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.853
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.853
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.853
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.845
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.845
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.845
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.845
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.845
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.806
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.806
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.783
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.783
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.783
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.775
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.744
SRSF6 Gallus gallus ENSGALG00000000990 N 0.744
SRSF6 Macaca mulatta ENSMMUG00000006742 N 0.736
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.736
GF17608 Drosophila ananassae FBgn0094626 I 0.736
PHUM290500 Pediculus humanus PHUM290500 I 0.736
GK13948 Drosophila willistoni FBgn0215954 I 0.736
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.736
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.736
Ame_R005284 Ailuropoda melanoleuca Ame_R005284 N 0.736
SRSF6 Sus scrofa ENSSSCG00000007362 N 0.736
B52 Drosophila melanogaster FBgn0004587 D 0.736
ISCW010321 Ixodes scapularis ISCW010321 I 0.729
GH18528 Drosophila grimshawi FBgn0125995 I 0.729
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.729
SRSF6_RABIT Oryctolagus cuniculus ENSOCUG00000009785 N 0.729
SRSF4 Gorilla gorilla ENSGGOG00000002444 N 0.729
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.729
GI22065 Drosophila mojavensis FBgn0144794 I 0.729
GJ24113 Drosophila virilis FBgn0211197 I 0.729
GL23543 Drosophila persimilis FBgn0161133 I 0.729
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.729
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.721
AGAP004592 Anopheles gambiae AGAP004592 I 0.721
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.721
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.721
AAH71160 Xenopus laevis AAH71160 I 0.713
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.713
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.713
Q9XSS6_CANFA Canis familiaris ENSCAFG00000009289 N 0.713
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.713
SRSF6 Choloepus hoffmanni ENSCHOG00000000561 N 0.713
SRSF6 Otolemur garnettii ENSOGAG00000014468 N 0.713
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.705
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.705
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.705
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.705
Srsf5 Mus musculus ENSMUSG00000021134 I 0.705
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.705
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.705
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.705
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.705
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.705
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.705
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.705
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.705
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.705
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.705
SRSF5 Felis catus ENSFCAG00000008848 I 0.705
SRSF5 Homo sapiens ENSG00000100650 D 0.705
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.705
ISCW014220 Ixodes scapularis ISCW014220 I 0.705
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.705
LOC100053264 Equus caballus ENSECAG00000026873 I 0.705
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.705
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.705
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.705
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.705
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.705
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.705
SFRS4 Gallus gallus ENSGALG00000001411 N 0.705
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.705
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.705