SRSF6 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000006084 T37436_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.752
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000008077 RRM 4 66
ENSGACP00000008077 RRM 105 170
ENSGACP00000008087 RRM 4 66
ENSGACP00000008087 RRM 114 179
ENSGACP00000008092 RRM 4 66
ENSGACP00000008092 RRM 114 179

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

132 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
srsf6b Danio rerio ENSDARG00000016783 I 0.953
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.946
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.938
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.922
srsf6a Danio rerio ENSDARG00000013729 I 0.915
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.907
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.907
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.907
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.899
Srsf6 Mus musculus ENSMUSG00000016921 I 0.899
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.899
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.899
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.899
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.899
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.899
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.899
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.899
SRSF6 Homo sapiens ENSG00000124193 I 0.899
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.891
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.891
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.891
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.884
AAH46668 Xenopus laevis AAH46668 I 0.884
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.884
AAH44265 Xenopus laevis AAH44265 I 0.876
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.853
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.837
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.829
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.829
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.829
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.829
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.829
SRSF4 Homo sapiens ENSG00000116350 I 0.829
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.829
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.829
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.829
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.829
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.829
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.829
Srsf4 Mus musculus ENSMUSG00000028911 I 0.829
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.829
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.829
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.829
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.829
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.829
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.829
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.829
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.829
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.822
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.822
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.822
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.822
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.822
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.806
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.791
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.791
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.783
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.767
PHUM290500 Pediculus humanus PHUM290500 I 0.767
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.767
GF17608 Drosophila ananassae FBgn0094626 I 0.752
GK13948 Drosophila willistoni FBgn0215954 I 0.752
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.752
B52 Drosophila melanogaster FBgn0004587 D 0.752
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.752
GJ24113 Drosophila virilis FBgn0211197 I 0.744
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.744
GL23543 Drosophila persimilis FBgn0161133 I 0.744
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.744
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.744
GI22065 Drosophila mojavensis FBgn0144794 I 0.744
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.744
GH18528 Drosophila grimshawi FBgn0125995 I 0.744
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.736
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.736
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.736
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.736
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.736
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.736
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.736
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.736
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.736
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.736
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.736
LOC100053264 Equus caballus ENSECAG00000026873 I 0.736
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.736
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.736
Srsf5 Mus musculus ENSMUSG00000021134 I 0.736
AGAP004592 Anopheles gambiae AGAP004592 I 0.736
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.736
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.736
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.736
SRSF5 Felis catus ENSFCAG00000008848 I 0.736
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.736
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.736
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.736
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.736
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.736
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.736
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.736
SRSF5 Homo sapiens ENSG00000100650 D 0.736
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.729
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.729
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.729
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.729
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.729
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.729
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.729
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.721
ISCW014220 Ixodes scapularis ISCW014220 I 0.721
ISCW010321 Ixodes scapularis ISCW010321 I 0.721
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.721
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.721
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.713
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.713
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.713
srsf5a Danio rerio ENSDARG00000029818 I 0.713
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.713
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.713
AAH71160 Xenopus laevis AAH71160 I 0.713
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.713
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.713
srsf5b Danio rerio ENSDARG00000027734 I 0.713
SRSF4 Gorilla gorilla ENSGGOG00000002444 N 0.705
SRSF6 Sus scrofa ENSSSCG00000007362 N 0.705
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.705
ISCW010322 Ixodes scapularis ISCW010322 I 0.705
Ame_R005284 Ailuropoda melanoleuca Ame_R005284 N 0.705
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.705
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.705
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.705