LOC100070472 (Equus caballus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSECAG00000012464 T36617_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.820
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.740
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000010218 RRM 1 38
ENSECAP00000010218 RRM 51 118
ENSECAP00000010218 RRM 146 208

Links

Other RRM family RBPs
Other Equus caballus RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.845
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.845
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.845
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.845
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.845
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.845
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.845
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.845
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.845
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.845
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.845
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.845
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.845
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.845
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.845
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.845
SYNCRIP Homo sapiens ENSG00000135316 I 0.845
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.845
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.845
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.845
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.840
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.840
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.840
Syncrip Mus musculus ENSMUSG00000032423 I 0.840
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.840
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.840
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.835
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.820
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.820
AAH70529 Xenopus laevis AAH70529 I 0.810
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.770
syncrip Danio rerio ENSDARG00000040184 I 0.770
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.757
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.750
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.748
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.748
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.748
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.748
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.746
syncripl Danio rerio ENSDARG00000026723 I 0.743
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.731
AAI61702 Xenopus laevis AAI61702 I 0.731
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.708
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.708
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.703
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.703
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.703
HNRNPR Homo sapiens ENSG00000125944 I 0.703
HNRNPR Equus caballus ENSECAG00000013733 I 0.703
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.703
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.703
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.703
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.703
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.703
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.703
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.703