SYNCRIP (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000017299 T42163_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.886
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.851
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.818
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000020437 RRM 168 238
ENSTNIP00000020437 RRM 249 316
ENSTNIP00000020437 RRM 344 406

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 1.000
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.965
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.950
syncripl Danio rerio ENSDARG00000026723 I 0.941
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.916
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.906
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.901
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.901
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.901
SYNCRIP Homo sapiens ENSG00000135316 I 0.901
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.901
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.901
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.901
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.901
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.901
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.901
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.901
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.901
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.901
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.901
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.901
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.901
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.901
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.901
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.901
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.901
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.901
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.901
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.901
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.901
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.896
Syncrip Mus musculus ENSMUSG00000032423 I 0.896
syncrip Danio rerio ENSDARG00000040184 I 0.896
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.896
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.896
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.896
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.891
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.886
AAH70529 Xenopus laevis AAH70529 I 0.886
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.847
AAI61702 Xenopus laevis AAI61702 I 0.842
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.823
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.818
HNRNPR Homo sapiens ENSG00000125944 I 0.818
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.818
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.818
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.818
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.818
HNRNPR Equus caballus ENSECAG00000013733 I 0.818
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.818
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.818
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.818
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.818
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.818
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.818
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.813
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.813
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.813
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.813
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.812
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.811
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.811
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.806
HNRNPR Sorex araneus ENSSARG00000001732 I 0.806
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.806
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.806
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.806
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.797
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.796
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.795
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.793
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.780
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.771
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.762
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.748
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.748
LOC100070472 Equus caballus ENSECAG00000012464 I 0.748
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.733
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.724
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.723