PABPN1L (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000005534 T40133_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000006962 RRM 66 135

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.914
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.914
PABPN1L Gasterosteus aculeatus ENSGACG00000015428 I 0.900
PABPN1 Homo sapiens ENSG00000100836 D 0.714
LOC100055599 Equus caballus ENSECAG00000011652 I 0.714
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.714
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.714
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.714
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.714
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.714
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.714
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.714
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.714
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.714
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.714
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.714
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.714
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.714
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.714
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.714
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.714
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.714
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.714
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.714
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.714
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.714
LOC100051357 Equus caballus ENSECAG00000000378 I 0.704
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.700
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.700
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.700
Sjc_0053490 Schistosoma japonicum Sjc_0053490 I 0.700
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.700
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.700
AAH45063 Xenopus laevis AAH45063 I 0.700
Smp_007630 Schistosoma mansoni Smp_007630 I 0.700
PABPN1 Gallus gallus ENSGALG00000006242 I 0.700
PABPN1L Tursiops truncatus ENSTTRG00000004691 N 0.700