Smp_007630 (Schistosoma mansoni)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Smp_007630 T58600_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.700
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Smp_007630.1 RRM 97 166
Smp_007630.2 RRM 88 157

Links

Other RRM family RBPs
Other Schistosoma mansoni RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Sjc_0053490 Schistosoma japonicum Sjc_0053490 I 1.000
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.761
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.743
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.729
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.729
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.729
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.729
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.729
LOAG_03634 Loa loa LOAG_03634 I 0.718
Bm1_48895 Brugia malayi Bm1_48895 I 0.718
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.718
e_gw.341.11.1 Branchiostoma floridae e_gw.341.11.1 I 0.714
AAH73657 Xenopus laevis AAH73657 I 0.714
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.714
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.714
AAG36902 Xenopus laevis AAG36902 I 0.714
AAH45063 Xenopus laevis AAH45063 I 0.714
Q9DDY9 Xenopus laevis Q9DDY9 I 0.714
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.714
AAR26262 Xenopus laevis AAR26262 I 0.714
pabpn1 Danio rerio ENSDARG00000045373 I 0.704
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.704
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.700
GG23338 Drosophila erecta FBgn0115489 I 0.700
GF13666 Drosophila ananassae FBgn0090694 I 0.700
GA15278-RA Drosophila pseudoobscura FBgn0075302 I 0.700
Pabp2 Drosophila yakuba FBgn0068105 I 0.700
Pabp2 Drosophila melanogaster FBgn0005648 I 0.700
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.700
PHUM037550 Pediculus humanus PHUM037550 I 0.700
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.700
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.700
GK23192 Drosophila willistoni FBgn0225154 I 0.700
GJ22134 Drosophila virilis FBgn0209248 I 0.700
GI19259 Drosophila mojavensis FBgn0141998 I 0.700
GM21011 Drosophila sechellia FBgn0175892 I 0.700
GD10545 Drosophila simulans FBgn0182316 I 0.700
GH21908 Drosophila grimshawi FBgn0129369 I 0.700
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.700
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.700
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.700
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.700
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.700
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.700
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.700
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.700
CpipJ_CPIJ004581 Culex pipiens CpipJ_CPIJ004581 I 0.700
AAEL015143 Aedes aegypti AAEL015143 I 0.700
AGAP005117 Anopheles gambiae AGAP005117 I 0.700
CPIJ004581 Culex quinquefasciatus CPIJ004581 I 0.700
LOC100055599 Equus caballus ENSECAG00000011652 I 0.700
PABPN1 Homo sapiens ENSG00000100836 D 0.700
PABPN1L Oryzias latipes ENSORLG00000005534 I 0.700
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.700
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.700
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.700
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.700
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.700
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.700
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.700
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.700
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.700
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.700