PABPN1L (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000015428 T37530_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000020349 RRM 91 160
ENSGACP00000020351 RRM 89 158

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

49 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPN1L Tetraodon nigroviridis ENSTNIG00000009416 I 0.929
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.929
PABPN1L Oryzias latipes ENSORLG00000005534 I 0.900
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.743
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.743
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.743
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.729
LOC100055599 Equus caballus ENSECAG00000011652 I 0.729
PABPN1 Homo sapiens ENSG00000100836 D 0.729
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.729
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.729
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.729
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.729
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.729
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.729
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.729
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.729
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.729
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.729
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.729
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.729
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.729
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.729
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.729
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.729
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.729
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.729
pabpn1 Danio rerio ENSDARG00000045373 I 0.718
AAH45063 Xenopus laevis AAH45063 I 0.714
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.714
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.714
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.714
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.704
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.704
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.704
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.704
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.704
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.700
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.700
PredSwiss_CON654.3 Pneumocystis carinii PredSwiss_CON654.3 I 0.700
PABPN1 Gallus gallus ENSGALG00000006242 I 0.700
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.700
AAG36902 Xenopus laevis AAG36902 I 0.700
AAH73657 Xenopus laevis AAH73657 I 0.700
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.700
Q9DDY9 Xenopus laevis Q9DDY9 I 0.700
AAR26262 Xenopus laevis AAR26262 I 0.700
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.700