PABPN1L (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000009416 T42069_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.757
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000012286 RRM 14 83

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPN1L Takifugu rubripes ENSTRUG00000017251 I 0.986
PABPN1L Gasterosteus aculeatus ENSGACG00000015428 I 0.929
PABPN1L Oryzias latipes ENSORLG00000005534 I 0.914
PABPN1 Homo sapiens ENSG00000100836 D 0.757
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.757
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.757
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.757
LOC100055599 Equus caballus ENSECAG00000011652 I 0.757
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.757
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.757
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.757
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.757
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.757
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.757
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.757
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.757
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.757
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.757
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.757
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.757
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.757
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.757
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.757
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.757
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.757
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.757
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.757
AAH45063 Xenopus laevis AAH45063 I 0.743
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.743
pabpn1 Danio rerio ENSDARG00000045373 I 0.732
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.732
AAG36902 Xenopus laevis AAG36902 I 0.729
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.729
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.729
Sjc_0053490 Schistosoma japonicum Sjc_0053490 I 0.729
Smp_007630 Schistosoma mansoni Smp_007630 I 0.729
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.729
Q9DDY9 Xenopus laevis Q9DDY9 I 0.729
AAR26262 Xenopus laevis AAR26262 I 0.729
AAH73657 Xenopus laevis AAH73657 I 0.729
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.718
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.718
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.718
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.718
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.718
ENSOCUG00000008701 Oryctolagus cuniculus ENSOCUG00000008701 I 0.714
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.714
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.714
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.714
gw1.9.516.1 Lottia gigantea gw1.9.516.1 I 0.704
Aqu1.225190 Amphimedon queenslandica Aqu1.225190 I 0.704
ENSCING00000012468 Ciona intestinalis ENSCING00000012468 I 0.704
estExt_Genewise1.C_30355 Daphnia pulex estExt_Genewise1.C_30355 I 0.700
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.700
PABPN1 Gallus gallus ENSGALG00000006242 I 0.700
DGIL_AUG5s13013g8t1 Acyrtosiphon pisum DGIL_AUG5s13013g8t1 I 0.700
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.700
PredSwiss_CON654.3 Pneumocystis carinii PredSwiss_CON654.3 I 0.700
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.700
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.700