CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSRNOG00000024645
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000024645
T41170_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000010809
RRM
70
138
AFITNIPFDVKWQSLKDLAKEKVGEVTYMELLMDAEGKSRGCAVVEFKMEESMKKAVEVLNKHKGRPLK
ENSRNOP00000010809
RRM
211
269
AKKLKEVFSMAGAVVRADILEDKDGKSHGLGTVTFEQSTEAVQALFMFNGQLLFDRPMH
ENSRNOP00000010809
RRM
610
677
IFVRKFPFDFTWKMLKDKFNECGHVLYTDIKMENGKSKGYSVKFESPEVAERACRMMNGMKLSGREID
ENSRNOP00000056410
RRM
25
91
AFITNIPFDVKWQSLKDLAKEKVGEVTYMELLMDAEGKSRGCAVVEFKMEESMKKAVEVLNKHSGRP
ENSRNOP00000056410
RRM
166
224
AKKLKEVFSMAGAVVRADILEDKDGKSHGLGTVTFEQSTEAVQALFMFNGQLLFDRPMH
ENSRNOP00000056410
RRM
589
656
IFVRKFPFDFTWKMLKDKFNECGHVLYTDIKMENGKSKGYSVKFESPEVAERACRMMNGMKLSGREID
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
38 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPM
Microcebus murinus
ENSMICG00000002532
N
0.870
HNRNPM
Loxodonta africana
ENSLAFG00000013603
N
0.857
HNRNPM
Gorilla gorilla
ENSGGOG00000003498
N
0.857
HNRNPM
Pan troglodytes
ENSPTRG00000010424
N
0.857
HNRNPM
Echinops telfairi
ENSETEG00000019712
N
0.857
HNRNPM
Macaca mulatta
ENSMMUG00000018806
N
0.857
ENSPPYG00000009506
Pongo pygmaeus
ENSPPYG00000009506
N
0.857
Hnrpm
Rattus norvegicus
ENSRNOG00000007921
N
0.857
ENSOCUG00000024611
Oryctolagus cuniculus
ENSOCUG00000024611
N
0.857
ENSOCUG00000000552
Oryctolagus cuniculus
ENSOCUG00000000552
N
0.857
HNRNPM
Equus caballus
ENSECAG00000023868
N
0.857
HNRNPM
Homo sapiens
ENSG00000099783
N
0.857
Q3SYX2_BOVIN
Bos taurus
ENSBTAG00000021039
N
0.857
HNRNPM
Tursiops truncatus
ENSTTRG00000009769
N
0.857
HNRNPM
Sus scrofa
ENSSSCG00000013602
N
0.857
HNRNPM
Canis familiaris
ENSCAFG00000018524
N
0.857
Ame_R017061
Ailuropoda melanoleuca
Ame_R017061
N
0.857
HNRNPM
Choloepus hoffmanni
ENSCHOG00000013627
N
0.857
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.852
HNRNPM
Cavia porcellus
ENSCPOG00000015182
N
0.852
HNRNPM
Myotis lucifugus
ENSMLUG00000006696
N
0.852
HNRNPM
Callithrix jacchus
ENSCJAG00000010802
N
0.852
XM_001365870.1
Monodelphis domestica
ENSMODG00000003801
N
0.848
HNRNPM
Procavia capensis
ENSPCAG00000009678
N
0.838
HNRNPM
Tupaia belangeri
ENSTBEG00000008718
N
0.838
HNRNPM
Spermophilus tridecemlineatus
ENSSTOG00000008112
N
0.836
Q5ZL80_CHICK
Gallus gallus
ENSGALG00000000377
N
0.834
HNRNPM
Sorex araneus
ENSSARG00000000267
N
0.834
HNRNPM
Meleagris gallopavo
ENSMGAG00000000700
N
0.825
HNRNPM
Ochotona princeps
ENSOPRG00000001943
N
0.810
HNRNPM
Dasypus novemcinctus
ENSDNOG00000012157
N
0.791
HNRNPM
Macropus eugenii
ENSMEUG00000004789
N
0.782
HNRNPM
Felis catus
ENSFCAG00000015218
N
0.758
HNRNPM
Otolemur garnettii
ENSOGAG00000003234
N
0.752
AAI34826
Xenopus laevis
AAI34826
N
0.752
HNRNPM
Gasterosteus aculeatus
ENSGACG00000010265
N
0.711
HNRNPM
Oryzias latipes
ENSORLG00000005400
N
0.701