CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPM
(
Ochotona princeps
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOPRG00000001943
T39935_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOPRP00000001806
RRM
35
105
AFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKLEESMKKAAEVLNKHSLSGRPLK
ENSOPRP00000001806
RRM
168
237
VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH
ENSOPRP00000001806
RRM
618
683
XXLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKVESPEVSERACRMMNGMKLDAREID
Links
Other
RRM
family RBPs
Other
Ochotona princeps
RBPs
63 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPM
Sorex araneus
ENSSARG00000000267
N
0.976
HNRNPM
Loxodonta africana
ENSLAFG00000013603
N
0.943
HNRNPM
Sus scrofa
ENSSSCG00000013602
N
0.943
HNRNPM
Canis familiaris
ENSCAFG00000018524
N
0.943
Q3SYX2_BOVIN
Bos taurus
ENSBTAG00000021039
N
0.943
Ame_R017061
Ailuropoda melanoleuca
Ame_R017061
N
0.943
HNRNPM
Tursiops truncatus
ENSTTRG00000009769
N
0.943
HNRNPM
Equus caballus
ENSECAG00000023868
N
0.943
HNRNPM
Homo sapiens
ENSG00000099783
N
0.943
ENSOCUG00000024611
Oryctolagus cuniculus
ENSOCUG00000024611
N
0.943
HNRNPM
Choloepus hoffmanni
ENSCHOG00000013627
N
0.943
ENSPPYG00000009506
Pongo pygmaeus
ENSPPYG00000009506
N
0.943
ENSOCUG00000000552
Oryctolagus cuniculus
ENSOCUG00000000552
N
0.943
HNRNPM
Echinops telfairi
ENSETEG00000019712
N
0.943
HNRNPM
Gorilla gorilla
ENSGGOG00000003498
N
0.943
HNRNPM
Macaca mulatta
ENSMMUG00000018806
N
0.943
HNRNPM
Callithrix jacchus
ENSCJAG00000010802
N
0.943
HNRNPM
Pan troglodytes
ENSPTRG00000010424
N
0.943
Hnrpm
Rattus norvegicus
ENSRNOG00000007921
N
0.943
HNRNPM
Cavia porcellus
ENSCPOG00000015182
N
0.938
HNRNPM
Myotis lucifugus
ENSMLUG00000006696
N
0.938
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.938
XM_001365870.1
Monodelphis domestica
ENSMODG00000003801
N
0.934
HNRNPM
Procavia capensis
ENSPCAG00000009678
N
0.934
HNRNPM
Tupaia belangeri
ENSTBEG00000008718
N
0.924
Q5ZL80_CHICK
Gallus gallus
ENSGALG00000000377
N
0.924
HNRNPM
Microcebus murinus
ENSMICG00000002532
N
0.919
HNRNPM
Meleagris gallopavo
ENSMGAG00000000700
N
0.901
HNRNPM
Dasypus novemcinctus
ENSDNOG00000012157
N
0.877
HNRNPM
Spermophilus tridecemlineatus
ENSSTOG00000008112
N
0.872
HNRNPM
Macropus eugenii
ENSMEUG00000004789
N
0.867
HNRNPM
Felis catus
ENSFCAG00000015218
N
0.844
HNRNPM
Otolemur garnettii
ENSOGAG00000003234
N
0.829
AAI34826
Xenopus laevis
AAI34826
N
0.820
ENSRNOG00000024645
Rattus norvegicus
ENSRNOG00000024645
N
0.810
HNRNPM
Gasterosteus aculeatus
ENSGACG00000010265
N
0.774
HNRNPM
Oryzias latipes
ENSORLG00000005400
N
0.764
hnrnpm
Xenopus tropicalis
ENSXETG00000001777
N
0.763
HNRNPM
Takifugu rubripes
ENSTRUG00000013783
N
0.745
HNRNPM
Tetraodon nigroviridis
ENSTNIG00000015530
N
0.736
Myef2
Rattus norvegicus
ENSRNOG00000005258
N
0.726
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.726
MYEF2
Macaca mulatta
ENSMMUG00000018834
N
0.722
MYEF2
Meleagris gallopavo
ENSMGAG00000006915
N
0.722
MYEF2
Canis familiaris
ENSCAFG00000014008
N
0.722
MYEF2
Tursiops truncatus
ENSTTRG00000008076
N
0.722
MYEF2
Vicugna pacos
ENSVPAG00000004721
N
0.722
MYEF2
Pan troglodytes
ENSPTRG00000007042
N
0.722
ENSPPYG00000006452
Pongo pygmaeus
ENSPPYG00000006452
N
0.722
MYEF2
Procavia capensis
ENSPCAG00000016660
N
0.722
Ame_R005511
Ailuropoda melanoleuca
Ame_R005511
N
0.722
MYEF2
Oryctolagus cuniculus
ENSOCUG00000013043
N
0.722
MYEF2
Homo sapiens
ENSG00000104177
N
0.722
LOC100070256
Equus caballus
ENSECAG00000005741
N
0.722
Myef2
Mus musculus
ENSMUSG00000027201
N
0.722
A6QQP0_BOVIN
Bos taurus
ENSBTAG00000008771
N
0.722
Q5ZHY2_CHICK
Gallus gallus
ENSGALG00000004905
N
0.722
MYEF2
Callithrix jacchus
ENSCJAG00000001875
N
0.717
MYEF2
Taeniopygia guttata
ENSTGUG00000007130
N
0.717
MYEF2
Gorilla gorilla
ENSGGOG00000014968
N
0.717
ENSDORG00000015835
Dipodomys ordii
ENSDORG00000015835
N
0.717
MYEF2
Sus scrofa
ENSSSCG00000004661
N
0.712
MYEF2
Anolis carolinensis
ENSACAG00000004806
N
0.708