CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPM
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000010265
T37479_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000013576
RRM
85
155
VFVSNIPYDVKWQALKDLMKEKVGEVTYVEHLMDAEGKSRGCAVVEFRTEELMKKAVEKVNKHNLNGRPLK
ENSGACP00000013576
RRM
221
290
VFVANLDYKVGWKKLKEVFSMAGMVVRADILEDKDGKSRGMGTVTFDMPIEAVQAVSMFNGQLLFNRVMH
ENSGACP00000013576
RRM
579
647
IFVRNLPFDFNWKMLKDTFNTCGMVQYADIKMENGKSKGCGVVRFDTPETAERVCRTMNGYRLNGREID
ENSGACP00000013583
RRM
30
100
VFVSNIPYDVKWQALKDLMKEKVGEVTYVEHLMDAEGKSRGCAVVEFRTEELMKKAVEKVNKHNLNGRPLK
ENSGACP00000013583
RRM
166
235
VFVANLDYKVGWKKLKEVFSMAGMVVRADILEDKDGKSRGMGTVTFDMPIEAVQAVSMFNGQLLFNRVMH
ENSGACP00000013583
RRM
570
640
IFVRNLPFDFNWKMLKDTFNTCGKSMVQYADIKMENGKSKGCGVVRFDTPETAERVCRTMNGYRLNGREID
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
71 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPM
Oryzias latipes
ENSORLG00000005400
N
0.938
HNRNPM
Takifugu rubripes
ENSTRUG00000013783
N
0.938
HNRNPM
Tetraodon nigroviridis
ENSTNIG00000015530
N
0.924
HNRNPM
Callithrix jacchus
ENSCJAG00000010802
N
0.820
Q5ZL80_CHICK
Gallus gallus
ENSGALG00000000377
N
0.816
HNRNPM
Equus caballus
ENSECAG00000023868
N
0.815
Hnrpm
Rattus norvegicus
ENSRNOG00000007921
N
0.815
ENSPPYG00000009506
Pongo pygmaeus
ENSPPYG00000009506
N
0.815
HNRNPM
Echinops telfairi
ENSETEG00000019712
N
0.815
HNRNPM
Cavia porcellus
ENSCPOG00000015182
N
0.815
HNRNPM
Sus scrofa
ENSSSCG00000013602
N
0.815
Q3SYX2_BOVIN
Bos taurus
ENSBTAG00000021039
N
0.815
HNRNPM
Canis familiaris
ENSCAFG00000018524
N
0.815
Ame_R017061
Ailuropoda melanoleuca
Ame_R017061
N
0.815
HNRNPM
Tursiops truncatus
ENSTTRG00000009769
N
0.815
ENSOCUG00000024611
Oryctolagus cuniculus
ENSOCUG00000024611
N
0.815
HNRNPM
Choloepus hoffmanni
ENSCHOG00000013627
N
0.815
HNRNPM
Pan troglodytes
ENSPTRG00000010424
N
0.815
HNRNPM
Gorilla gorilla
ENSGGOG00000003498
N
0.815
HNRNPM
Homo sapiens
ENSG00000099783
N
0.815
HNRNPM
Loxodonta africana
ENSLAFG00000013603
N
0.815
HNRNPM
Macaca mulatta
ENSMMUG00000018806
N
0.815
ENSOCUG00000000552
Oryctolagus cuniculus
ENSOCUG00000000552
N
0.815
XM_001365870.1
Monodelphis domestica
ENSMODG00000003801
N
0.810
HNRNPM
Procavia capensis
ENSPCAG00000009678
N
0.810
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.810
HNRNPM
Myotis lucifugus
ENSMLUG00000006696
N
0.810
HNRNPM
Meleagris gallopavo
ENSMGAG00000000700
N
0.807
HNRNPM
Tupaia belangeri
ENSTBEG00000008718
N
0.806
HNRNPM
Microcebus murinus
ENSMICG00000002532
N
0.791
HNRNPM
Sorex araneus
ENSSARG00000000267
N
0.788
HNRNPM
Ochotona princeps
ENSOPRG00000001943
N
0.774
AAI34826
Xenopus laevis
AAI34826
N
0.768
myef2
Xenopus tropicalis
ENSXETG00000018412
N
0.762
HNRNPM
Dasypus novemcinctus
ENSDNOG00000012157
N
0.755
HNRNPM
Spermophilus tridecemlineatus
ENSSTOG00000008112
N
0.752
HNRNPM
Macropus eugenii
ENSMEUG00000004789
N
0.750
AAI08588
Xenopus laevis
AAI08588
N
0.748
MYEF2
Loxodonta africana
ENSLAFG00000012990
N
0.748
Ame_R005511
Ailuropoda melanoleuca
Ame_R005511
N
0.743
ENSPPYG00000006452
Pongo pygmaeus
ENSPPYG00000006452
N
0.743
MYEF2
Procavia capensis
ENSPCAG00000016660
N
0.743
MYEF2
Homo sapiens
ENSG00000104177
N
0.743
A6QQP0_BOVIN
Bos taurus
ENSBTAG00000008771
N
0.743
MYEF2
Anolis carolinensis
ENSACAG00000004806
N
0.743
MYEF2
Pan troglodytes
ENSPTRG00000007042
N
0.743
MYEF2
Vicugna pacos
ENSVPAG00000004721
N
0.743
MYEF2
Oryctolagus cuniculus
ENSOCUG00000013043
N
0.743
MYEF2
Meleagris gallopavo
ENSMGAG00000006915
N
0.743
LOC100070256
Equus caballus
ENSECAG00000005741
N
0.743
Q5ZHY2_CHICK
Gallus gallus
ENSGALG00000004905
N
0.743
MYEF2
Macaca mulatta
ENSMMUG00000018834
N
0.743
MYEF2
Tursiops truncatus
ENSTTRG00000008076
N
0.743
MYEF2
Canis familiaris
ENSCAFG00000014008
N
0.743
MYEF2
Callithrix jacchus
ENSCJAG00000001875
N
0.738
MYEF2
Taeniopygia guttata
ENSTGUG00000007130
N
0.738
MYEF2
Oryzias latipes
ENSORLG00000002730
N
0.738
Myef2
Rattus norvegicus
ENSRNOG00000005258
N
0.738
ENSDORG00000015835
Dipodomys ordii
ENSDORG00000015835
N
0.738
MYEF2
Gorilla gorilla
ENSGGOG00000014968
N
0.738
MYEF2
Sus scrofa
ENSSSCG00000004661
N
0.733
Myef2
Mus musculus
ENSMUSG00000027201
N
0.733
HNRNPM
Otolemur garnettii
ENSOGAG00000003234
N
0.730
MYEF2
Gasterosteus aculeatus
ENSGACG00000016759
N
0.729
MYEF2
Tetraodon nigroviridis
ENSTNIG00000009526
N
0.725
myef2
Danio rerio
ENSDARG00000059398
N
0.724
MYEF2
Takifugu rubripes
ENSTRUG00000016967
N
0.723
HNRNPM
Felis catus
ENSFCAG00000015218
N
0.722
ENSRNOG00000024645
Rattus norvegicus
ENSRNOG00000024645
N
0.711
hnrnpm
Xenopus tropicalis
ENSXETG00000001777
N
0.711