D3ZQR9_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000027605 T41185_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.782
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.782
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.782
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.768
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000053541 RRM 20 85
ENSRNOP00000053541 RRM 107 175

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

117 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.757
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.757
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.757
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.757
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.757
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.757
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.757
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.757
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.757
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.757
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.757
HNRNPA1 Homo sapiens ENSG00000135486 D 0.757
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.757
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.757
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.757
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.757
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.757
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.757
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.757
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.757
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.757
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.757
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.757
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.757
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.757
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.757
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.757
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.757
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.757
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.755
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.750
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.750
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.750
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.750
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.750
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.750
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.750
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.750
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.743
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.743
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.743
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.743
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.743
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.743
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.736
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.736
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.736
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.736
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.736
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.736
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.736
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.736
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.734
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.734
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.729
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.729
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.729
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.729
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.729
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.729
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.729
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.729
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.729
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.727
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.725
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.724
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.723
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.723
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.722
CBU92546 Xenopus laevis CBU92546 I 0.722
AAH72090 Xenopus laevis AAH72090 I 0.722
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.722
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.722
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.722
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.722
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.722
CBF67672 Xenopus laevis CBF67672 I 0.722
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.721
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.720
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.720
LOC100054206 Equus caballus ENSECAG00000006699 I 0.720
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.720
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.717
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.715
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.715
AAH45260 Xenopus laevis AAH45260 I 0.715
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.715
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.713
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.711
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.709
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.708
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.708
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.708
CBU92428 Xenopus laevis CBU92428 I 0.708
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.708
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.708
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.708
LOC785445 Bos taurus ENSBTAG00000025621 I 0.708
P17130 Xenopus laevis P17130 I 0.708
CBF67555 Xenopus laevis CBF67555 I 0.708
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.708
AAA49741 Xenopus laevis AAA49741 I 0.708
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.708
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.708
AAA49742 Xenopus laevis AAA49742 I 0.708
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.708
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.706
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.704
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.703
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.701
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.701
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.701
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.701
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.701
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.701
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.701
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.700