ENSCAFG00000013303 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000013303 T35114_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.824
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.824
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.824
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.817
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000031911 RRM 5 74
ENSCAFP00000031911 RRM 96 164

Links

Other RRM family RBPs
Other Canis familiaris RBPs

232 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.793
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.793
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.793
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.793
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.793
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.793
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.793
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.793
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.793
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.793
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.793
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.793
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.793
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.793
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.793
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.793
HNRNPA1 Homo sapiens ENSG00000135486 D 0.793
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.793
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.793
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.793
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.793
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.793
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.793
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.793
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.793
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.786
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.786
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.786
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.786
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.786
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.786
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.786
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.786
LOC100054206 Equus caballus ENSECAG00000006699 I 0.785
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.782
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.780
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.780
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.779
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.779
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.779
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.779
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.779
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.779
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.779
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.779
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.779
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.778
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.772
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.772
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.772
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.772
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.772
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.772
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.772
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.772
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.772
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.772
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.772
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.772
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.772
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.772
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.772
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.771
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.771
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.766
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.766
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.766
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.766
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.766
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.766
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.766
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.764
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.764
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.764
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.764
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.764
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.764
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.757
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.757
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.757
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.754
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.753
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.752
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.752
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.752
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.750
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.750
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.750
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.750
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.750
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.747
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.746
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.746
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.745
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.745
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.745
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.745
LOC785445 Bos taurus ENSBTAG00000025621 I 0.745
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.745
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.745
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.745
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.743
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.743
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.743
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.743
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.743
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.741
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.741
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.741
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.739
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.738
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.738
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.738
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.738
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.738
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.738
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.736
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.736
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.736
CBF67577 Xenopus laevis CBF67577 I 0.736
CBU92450 Xenopus laevis CBU92450 I 0.736
P51989 Xenopus laevis P51989 I 0.736
AAH46692 Xenopus laevis AAH46692 I 0.736
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.736
AAA49948 Xenopus laevis AAA49948 I 0.736
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.732
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.731
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.731
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.731
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.731
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.731
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.730
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.729
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.729
LOC100068539 Equus caballus ENSECAG00000000782 I 0.729
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.729
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.729
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.729
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.729
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.729
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.729
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.729
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.729
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.729
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.729
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.729
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.729
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.729
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.729
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.729
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.729
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.729
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.729
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.729
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.729
ENSCAFG00000020428 Canis familiaris ENSCAFG00000020428 I 0.729
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.729
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.729
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.729
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.729
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.729
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.729
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.729
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.725
CBF67672 Xenopus laevis CBF67672 I 0.724
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.724
CBU92546 Xenopus laevis CBU92546 I 0.724
AAH45260 Xenopus laevis AAH45260 I 0.724
AAH72090 Xenopus laevis AAH72090 I 0.724
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.724
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.724
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.724
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.724
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.724
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.724
D4A1X0_RAT Rattus norvegicus ENSRNOG00000021254 I 0.723
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.722
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.721
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.721
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.721
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.721
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.721
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.721
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.720
AAA49741 Xenopus laevis AAA49741 I 0.717
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.717
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.717
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.717
CBU92428 Xenopus laevis CBU92428 I 0.717
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.717
CBF67555 Xenopus laevis CBF67555 I 0.717
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.717
P17130 Xenopus laevis P17130 I 0.717
AAA49742 Xenopus laevis AAA49742 I 0.717
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.716
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.715
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.714
ENSSSCG00000015836 Sus scrofa ENSSSCG00000015836 I 0.714
ENSBTAG00000021755 Bos taurus ENSBTAG00000021755 I 0.712
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.711
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.711
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.710
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.710
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.710
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.710
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.710
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.710
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.710
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.709
ENSGGOG00000027762 Gorilla gorilla ENSGGOG00000027762 I 0.707
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.707
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.707
AAI06633 Xenopus laevis AAI06633 I 0.707
P51990 Xenopus laevis P51990 I 0.707
AAH43750 Xenopus laevis AAH43750 I 0.707
AAB59951 Xenopus laevis AAB59951 I 0.707
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.703
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.703
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.703
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.703
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.703
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.703
ENSGGOG00000022797 Gorilla gorilla ENSGGOG00000022797 I 0.702
ENSRNOG00000029434 Rattus norvegicus ENSRNOG00000029434 I 0.700
ENSCAFG00000005307 Canis familiaris ENSCAFG00000005307 I 0.700
D3ZQR9_RAT Rattus norvegicus ENSRNOG00000027605 I 0.700
ENSETEG00000018059 Echinops telfairi ENSETEG00000018059 I 0.700