ENSCAFG00000005207 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000005207 T35023_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.887
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.887
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.887
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.865
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000035524 RRM 16 84
ENSCAFP00000035524 RRM 106 175

Links

Other RRM family RBPs
Other Canis familiaris RBPs

245 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.894
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.887
HNRNPA1 Homo sapiens ENSG00000135486 D 0.887
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.887
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.887
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.887
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.887
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.887
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.887
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.887
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.887
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.887
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.887
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.887
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.887
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.887
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.887
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.887
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.887
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.887
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.887
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.887
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.887
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.887
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.887
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.887
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.887
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.887
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.887
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.886
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.879
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.879
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.879
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.879
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.879
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.879
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.879
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.872
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.872
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.872
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.872
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.872
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.872
LOC785445 Bos taurus ENSBTAG00000025621 I 0.871
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.865
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.865
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.865
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.865
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.865
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.865
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.865
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.858
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.858
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.858
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.858
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.858
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.858
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.858
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.857
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.857
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.852
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.852
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.851
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.851
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.851
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.851
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.850
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.850
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.850
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.844
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.844
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.844
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.844
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.844
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.843
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.843
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.843
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.843
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.843
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.843
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.837
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.837
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.836
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.836
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.836
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.836
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.836
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.836
AAH45260 Xenopus laevis AAH45260 I 0.830
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.830
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.830
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.829
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.829
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.829
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.824
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.823
CBU92546 Xenopus laevis CBU92546 I 0.823
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.823
AAH72090 Xenopus laevis AAH72090 I 0.823
CBF67672 Xenopus laevis CBF67672 I 0.823
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.823
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.821
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.821
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.817
LOC100054206 Equus caballus ENSECAG00000006699 I 0.817
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.816
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.816
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.814
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.814
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.814
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.814
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.811
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.811
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.811
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.810
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.810
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.810
P17130 Xenopus laevis P17130 I 0.809
CBF67555 Xenopus laevis CBF67555 I 0.809
CBU92428 Xenopus laevis CBU92428 I 0.809
AAA49741 Xenopus laevis AAA49741 I 0.809
AAA49742 Xenopus laevis AAA49742 I 0.809
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.803
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.803
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.801
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.800
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.796
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.796
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.796
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.796
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.793
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.793
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.787
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.786
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.783
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.782
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.782
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.781
AAA49949 Xenopus laevis AAA49949 I 0.780
P51968 Xenopus laevis P51968 I 0.780
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.779
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.779
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.779
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.779
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.775
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.775
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.773
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.773
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.773
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.773
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.771
AAI69881 Xenopus laevis AAI69881 I 0.769
AAA49950 Xenopus laevis AAA49950 I 0.769
CBU92451 Xenopus laevis CBU92451 I 0.769
CBF67578 Xenopus laevis CBF67578 I 0.769
P51992 Xenopus laevis P51992 I 0.769
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.768
HNRNPA3 Homo sapiens ENSG00000170144 I 0.768
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.768
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.768
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.768
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.768
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.768
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.768
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.768
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.768
LOC781499 Bos taurus ENSBTAG00000021580 I 0.768
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.768
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.768
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.768
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.768
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.768
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.768
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.768
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.768
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.768
Gm8991 Mus musculus ENSMUSG00000059179 I 0.766
LOC100066794 Equus caballus ENSECAG00000023237 I 0.766
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.766
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.766
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.761
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.761
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.761
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.759
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.759
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.755
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.755
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.752
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.752
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.745
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.745
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.741
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.740
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.739
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.738
zgc:66127 Danio rerio ENSDARG00000011020 I 0.738
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.736
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.736
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.736
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.734
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.732
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.731
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.731
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.731
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.727
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.726
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.725
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.725
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.724
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.724
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.724
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.723
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.721
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.720
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.720
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.719
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.719
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.718
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.718
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.718
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.717
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.717
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.716
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.716
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.715
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.713
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.711
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.710
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.709
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.709
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.706
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.705
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.705
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.705
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.704
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.704
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.703
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.703
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.702
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.702
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.702
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.702
D3ZQR9_RAT Rattus norvegicus ENSRNOG00000027605 I 0.701
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.701
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.701