CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF3
(
Tupaia belangeri
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTBEG00000010130
T41764_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
bru-3
M117_0.6
Drosophila melanogaster
KUGKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00122
0.716
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTBEP00000008779
RRM
21
79
LFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQSHAEAQAAXXXX
ENSTBEP00000008779
RRM
298
368
IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Tupaia belangeri
RBPs
48 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSFCAG00000007908
Felis catus
ENSFCAG00000007908
N
0.938
ENSGGOG00000023049
Gorilla gorilla
ENSGGOG00000023049
I
0.879
CELF3
Takifugu rubripes
ENSTRUG00000012064
I
0.821
CELF3
Ornithorhynchus anatinus
ENSOANG00000004406
N
0.779
CELF6
Monodelphis domestica
ENSMODG00000001784
I
0.764
CELF6
Gasterosteus aculeatus
ENSGACG00000016626
I
0.757
CELF6
Oryzias latipes
ENSORLG00000013392
I
0.757
CELF6
Ornithorhynchus anatinus
ENSOANG00000011308
I
0.750
A5A2G4_CHICK
Gallus gallus
ENSGALG00000001966
I
0.750
CELF6
Takifugu rubripes
ENSTRUG00000012391
I
0.750
AGAP004950
Anopheles gambiae
AGAP004950
I
0.743
AAEL014033
Aedes aegypti
AAEL014033
I
0.743
BRUNOL4
Taeniopygia guttata
ENSTGUG00000001649
I
0.736
GM24582
Drosophila sechellia
FBgn0179445
I
0.736
GF10965
Drosophila ananassae
FBgn0088005
I
0.736
GG13757
Drosophila erecta
FBgn0106020
I
0.736
A5A2G2_CHICK
Gallus gallus
ENSGALG00000002413
I
0.736
CELF6
Ochotona princeps
ENSOPRG00000019169
I
0.736
GD12651
Drosophila simulans
FBgn0184378
I
0.736
GE20053
Drosophila yakuba
FBgn0237378
I
0.736
GK17101
Drosophila willistoni
FBgn0219100
I
0.736
bru-3
Drosophila melanogaster
FBgn0262350
D
0.736
CELF5
Tetraodon nigroviridis
ENSTNIG00000010634
I
0.736
CELF5
Takifugu rubripes
ENSTRUG00000017937
I
0.736
GI13095
Drosophila mojavensis
FBgn0135852
I
0.729
GH14684
Drosophila grimshawi
FBgn0122160
I
0.729
Celf6
Mus musculus
ENSMUSG00000032297
I
0.729
CELF4
Loxodonta africana
ENSLAFG00000021352
I
0.729
CELF5
Monodelphis domestica
ENSMODG00000019151
I
0.729
HEXA
Macaca mulatta
ENSMMUG00000010687
I
0.729
GL21647
Drosophila persimilis
FBgn0159240
I
0.729
CELF5
Callithrix jacchus
ENSCJAG00000014799
I
0.729
CELF6
Pan troglodytes
ENSPTRG00000034360
I
0.729
PHUM315130
Pediculus humanus
PHUM315130
I
0.729
GA28624-RA
Drosophila pseudoobscura
FBgn0249984
I
0.729
CELF5
Gasterosteus aculeatus
ENSGACG00000012870
I
0.729
LOC100414308
Callithrix jacchus
ENSCJAG00000018355
I
0.729
BRUNOL6
Homo sapiens
ENSG00000140488
D
0.729
GJ13842
Drosophila virilis
FBgn0201061
I
0.729
CELF5
Cavia porcellus
ENSCPOG00000005740
I
0.729
CELF5
Gorilla gorilla
ENSGGOG00000002078
I
0.723
CELF5
Macaca mulatta
ENSMMUG00000015513
I
0.723
Brunol4
Rattus norvegicus
ENSRNOG00000014503
I
0.721
CELF5
Anolis carolinensis
ENSACAG00000016959
I
0.721
CELF5
Ochotona princeps
ENSOPRG00000007881
I
0.721
amel4_ncbi_hmm7761
Apis mellifera
amel4_ncbi_hmm7761
I
0.707
Smp_041280
Schistosoma mansoni
Smp_041280
I
0.700
nasonia_NCBI_hmm496514
Nasonia vitripennis
nasonia_NCBI_hmm496514
I
0.700