LOC100414308 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000018355 T35658_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.986
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.833
bru-3
M117_0.6 		Drosophila melanogaster KUGKUGU RNAcompete
Ray et al.(2013)
RNCMPT00122 		0.821
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.744
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.720
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000002102 RRM 48 117
ENSCJAP00000002102 RRM 136 203
ENSCJAP00000002102 RRM 398 468
ENSCJAP00000034028 RRM 21 88
ENSCJAP00000034028 RRM 261 331
ENSCJAP00000034040 RRM 2 64
ENSCJAP00000034040 RRM 259 329
ENSCJAP00000034050 RRM 48 117
ENSCJAP00000034050 RRM 136 203
ENSCJAP00000034050 RRM 371 441
ENSCJAP00000034055 RRM 23 90
ENSCJAP00000034055 RRM 285 355

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HEXA Macaca mulatta ENSMMUG00000010687 I 0.993
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.993
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.990
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.986
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.986
CELF6 Felis catus ENSFCAG00000016249 I 0.986
BRUNOL6 Homo sapiens ENSG00000140488 D 0.986
CELF6 Bos taurus ENSBTAG00000014092 I 0.986
CELF6 Sus scrofa ENSSSCG00000001928 I 0.986
CELF6 Ochotona princeps ENSOPRG00000019169 I 0.986
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.981
Celf6 Mus musculus ENSMUSG00000032297 I 0.981
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.981
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.972
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.900
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.857
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.857
A5A2G4_CHICK Gallus gallus ENSGALG00000001966 I 0.850
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.850
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.848
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.848
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.848
CELF6 Oryzias latipes ENSORLG00000013392 I 0.843
Celf4 Mus musculus ENSMUSG00000024268 I 0.843
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.843
CELF6 Gasterosteus aculeatus ENSGACG00000016626 I 0.843
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.838
BRUNOL5 Homo sapiens ENSG00000161082 D 0.833
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.833
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.833
CELF5 Monodelphis domestica ENSMODG00000019151 I 0.829
CELF5 Cavia porcellus ENSCPOG00000005740 I 0.829
GI13095 Drosophila mojavensis FBgn0135852 I 0.829
GH14684 Drosophila grimshawi FBgn0122160 I 0.829
CELF5 Callithrix jacchus ENSCJAG00000014799 I 0.829
GJ13842 Drosophila virilis FBgn0201061 I 0.829
CELF4 Oryzias latipes ENSORLG00000008913 I 0.829
GK17101 Drosophila willistoni FBgn0219100 I 0.829
AAH57704 Xenopus laevis AAH57704 I 0.824
AAA81375 Xenopus laevis AAA81375 I 0.824
Q91579 Xenopus laevis Q91579 I 0.824
ACH69785 Xenopus laevis ACH69785 I 0.824
AAH72134 Xenopus laevis AAH72134 I 0.824
GF10965 Drosophila ananassae FBgn0088005 I 0.821
GG13757 Drosophila erecta FBgn0106020 I 0.821
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.821
GE20053 Drosophila yakuba FBgn0237378 I 0.821
A5A2G2_CHICK Gallus gallus ENSGALG00000002413 I 0.821
GM24582 Drosophila sechellia FBgn0179445 I 0.821
PHUM315130 Pediculus humanus PHUM315130 I 0.821
bru-3 Drosophila melanogaster FBgn0262350 D 0.821
GD12651 Drosophila simulans FBgn0184378 I 0.821
BRUNOL4 Taeniopygia guttata ENSTGUG00000001649 I 0.821
GA28624-RA Drosophila pseudoobscura FBgn0249984 I 0.821
CELF5 Anolis carolinensis ENSACAG00000016959 I 0.814
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.814
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.814
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.814
CELF3 Canis familiaris ENSCAFG00000012794 I 0.814
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.814
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.814
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.814
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.814
AAH46942 Xenopus laevis AAH46942 I 0.814
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.814
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.814
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.814
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.814
Celf3 Mus musculus ENSMUSG00000028137 I 0.814
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.814
CELF3 Homo sapiens ENSG00000159409 I 0.814
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.814
CELF3 Equus caballus ENSECAG00000020365 I 0.814
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.814
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.814
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.814
GL21647 Drosophila persimilis FBgn0159240 I 0.813
CELF5 Ochotona princeps ENSOPRG00000007881 I 0.813
CELF5 Oryzias latipes ENSORLG00000004600 I 0.810
celf5 Danio rerio ENSDARG00000071375 I 0.810
CELF5 Gorilla gorilla ENSGGOG00000002078 I 0.809
CELF5 Tetraodon nigroviridis ENSTNIG00000010634 I 0.807
CELF5 Takifugu rubripes ENSTRUG00000017937 I 0.807
Smp_041280 Schistosoma mansoni Smp_041280 I 0.807
AGAP004950 Anopheles gambiae AGAP004950 I 0.807
AAEL014033 Aedes aegypti AAEL014033 I 0.807
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.805
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.805
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.805
CELF6 Cavia porcellus ENSCPOG00000025842 I 0.804
celf3 Danio rerio ENSDARG00000034668 I 0.800
CELF5 Gasterosteus aculeatus ENSGACG00000012870 I 0.800
CELF3 Sus scrofa ENSSSCG00000006618 I 0.795
ENSGGOG00000023049 Gorilla gorilla ENSGGOG00000023049 I 0.793
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.789
CELF3 Oryzias latipes ENSORLG00000010447 I 0.789
amel4_ncbi_hmm7761 Apis mellifera amel4_ncbi_hmm7761 I 0.786
CELF3 Procavia capensis ENSPCAG00000001623 I 0.786
CELF3 Danio rerio ENSDARG00000006983 I 0.781
nasonia_NCBI_hmm496514 Nasonia vitripennis nasonia_NCBI_hmm496514 I 0.771
CELF6 Tursiops truncatus ENSTTRG00000002503 I 0.768
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.754
Bm1_27610 Brugia malayi Bm1_27610 I 0.752
Smp_131780 Schistosoma mansoni Smp_131780 I 0.750
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.749
BRUNOL4 Homo sapiens ENSG00000101489 D 0.749
ACH69784 Xenopus laevis ACH69784 I 0.749
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.749
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.749
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.744
LOAG_05508 Loa loa LOAG_05508 I 0.743
62054 Helobdella robusta 62054 I 0.743
estExt_fgenesh2_pg.C_sca_1310025 Lottia gigantea estExt_fgenesh2_pg.C_sca_1310025 I 0.741
CBG15358 Caenorhabditis briggsae CBG15358 I 0.730
CRE09771 Caenorhabditis remanei CRE09771 I 0.730
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.729
CJA07020 Caenorhabditis japonica CJA07020 I 0.729
Sjc_0024790 Schistosoma japonicum Sjc_0024790 I 0.729
CELF3 Tupaia belangeri ENSTBEG00000010130 I 0.729
unc-75 Caenorhabditis elegans C17D12.2 D 0.720
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.720
90208 Helobdella robusta 90208 I 0.709
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.703
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.703
CELF6 Macropus eugenii ENSMEUG00000010988 I 0.703
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.701
ENSFCAG00000007908 Felis catus ENSFCAG00000007908 N 0.700