a1cf (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000006611 T42844_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000003765
M244_0.6 		Gallus gallus DUAAUUV RNAcompete
Ray et al.(2013)
RNCMPT00291 		0.714
A1CF
M001_0.6 		Homo sapiens WUAAUUR RNAcompete
Ray et al.(2013)
RNCMPT00001 		0.703
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000014486 RRM 58 127
ENSXETP00000014486 RRM 138 204
ENSXETP00000014486 RRM 233 268
ENSXETP00000014487 RRM 58 127
ENSXETP00000014487 RRM 138 204
ENSXETP00000014487 RRM 233 268

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A1CF Felis catus ENSFCAG00000011179 I 0.832
AAH74127 Xenopus laevis AAH74127 I 0.782
A1CF Echinops telfairi ENSETEG00000012527 I 0.724
A1CF Meleagris gallopavo ENSMGAG00000001507 I 0.714
ENSGALG00000003765 Gallus gallus ENSGALG00000003765 D 0.714
A1CF Loxodonta africana ENSLAFG00000015462 I 0.713
A1CF Sus scrofa ENSSSCG00000010431 I 0.713
A1CF Taeniopygia guttata ENSTGUG00000005090 I 0.713
A1CF Anolis carolinensis ENSACAG00000015269 I 0.713
Ame_R002153 Ailuropoda melanoleuca Ame_R002153 I 0.713
A1CF Choloepus hoffmanni ENSCHOG00000009089 I 0.713
A1CF Equus caballus ENSECAG00000010424 I 0.713
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.708
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.708
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.708
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.708
A1CF Cavia porcellus ENSCPOG00000009807 I 0.708
A1CF Macaca mulatta ENSMMUG00000007077 I 0.708
A1CF Bos taurus ENSBTAG00000021195 I 0.708
A1cf Rattus norvegicus ENSRNOG00000033195 I 0.703
A1CF Homo sapiens ENSG00000148584 D 0.703
A1CF Gorilla gorilla ENSGGOG00000009670 I 0.703
A1CF Pan troglodytes ENSPTRG00000002508 I 0.703
A1CF Ornithorhynchus anatinus ENSOANG00000007360 I 0.701