A1CF (Anolis carolinensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSACAG00000015269 T34723_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000003765
M244_0.6 		Gallus gallus DUAAUUV RNAcompete
Ray et al.(2013)
RNCMPT00291 		0.921
A1CF
M001_0.6 		Homo sapiens WUAAUUR RNAcompete
Ray et al.(2013)
RNCMPT00001 		0.873
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSACAP00000015067 RRM 58 127
ENSACAP00000015067 RRM 138 204
ENSACAP00000015067 RRM 233 297

Links

Other RRM family RBPs
Other Anolis carolinensis RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A1CF Taeniopygia guttata ENSTGUG00000005090 I 0.931
ENSGALG00000003765 Gallus gallus ENSGALG00000003765 D 0.921
A1CF Meleagris gallopavo ENSMGAG00000001507 I 0.921
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.916
A1CF Choloepus hoffmanni ENSCHOG00000009089 I 0.916
A1CF Sus scrofa ENSSSCG00000010431 I 0.916
A1cf Rattus norvegicus ENSRNOG00000033195 I 0.916
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.911
A1CF Loxodonta africana ENSLAFG00000015462 I 0.911
A1CF Bos taurus ENSBTAG00000021195 I 0.911
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.911
A1CF Macaca mulatta ENSMMUG00000007077 I 0.911
A1CF Cavia porcellus ENSCPOG00000009807 I 0.911
A1CF Equus caballus ENSECAG00000010424 I 0.911
A1cf Mus musculus ENSMUSG00000052595 I 0.906
Ame_R002153 Ailuropoda melanoleuca Ame_R002153 I 0.901
A1CF Ornithorhynchus anatinus ENSOANG00000007360 I 0.897
AAH74127 Xenopus laevis AAH74127 I 0.896
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.896
A1CF Echinops telfairi ENSETEG00000012527 I 0.891
A1CF Monodelphis domestica ENSMODG00000016478 I 0.881
a1cf Danio rerio ENSDARG00000002968 I 0.881
A1CF Gorilla gorilla ENSGGOG00000009670 I 0.877
A1CF Canis familiaris ENSCAFG00000015581 I 0.876
A1CF Pan troglodytes ENSPTRG00000002508 I 0.873
A1CF Homo sapiens ENSG00000148584 D 0.873
A1CF Macropus eugenii ENSMEUG00000015909 I 0.871
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.861
A1CF Oryzias latipes ENSORLG00000013342 I 0.856
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.856
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.843
A1CF Dasypus novemcinctus ENSDNOG00000002829 I 0.830
A1cf Dipodomys ordii ENSDORG00000016548 I 0.822
A1CF Vicugna pacos ENSVPAG00000006130 I 0.817
A1CF Sorex araneus ENSSARG00000005940 I 0.755
A1CF Ochotona princeps ENSOPRG00000010667 I 0.752
A1CF Tursiops truncatus ENSTTRG00000013190 I 0.752
A1CF Felis catus ENSFCAG00000011179 I 0.723
a1cf Xenopus tropicalis ENSXETG00000006611 I 0.713
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.709
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.709
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.704