A1CF (Meleagris gallopavo)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMGAG00000001507 T38314_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000003765
M244_0.6 		Gallus gallus DUAAUUV RNAcompete
Ray et al.(2013)
RNCMPT00291 		0.985
A1CF
M001_0.6 		Homo sapiens WUAAUUR RNAcompete
Ray et al.(2013)
RNCMPT00001 		0.888
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMGAP00000000973 RRM 58 127
ENSMGAP00000000973 RRM 138 205
ENSMGAP00000000973 RRM 234 298

Links

Other RRM family RBPs
Other Meleagris gallopavo RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGALG00000003765 Gallus gallus ENSGALG00000003765 D 0.985
A1CF Taeniopygia guttata ENSTGUG00000005090 I 0.961
A1CF Loxodonta africana ENSLAFG00000015462 I 0.946
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.946
A1CF Choloepus hoffmanni ENSCHOG00000009089 I 0.946
A1CF Sus scrofa ENSSSCG00000010431 I 0.946
A1CF Macaca mulatta ENSMMUG00000007077 I 0.941
A1CF Equus caballus ENSECAG00000010424 I 0.941
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.941
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.941
A1CF Bos taurus ENSBTAG00000021195 I 0.941
A1CF Cavia porcellus ENSCPOG00000009807 I 0.941
A1cf Rattus norvegicus ENSRNOG00000033195 I 0.936
A1CF Ornithorhynchus anatinus ENSOANG00000007360 I 0.932
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.931
Ame_R002153 Ailuropoda melanoleuca Ame_R002153 I 0.926
A1cf Mus musculus ENSMUSG00000052595 I 0.926
A1CF Anolis carolinensis ENSACAG00000015269 I 0.921
A1CF Echinops telfairi ENSETEG00000012527 I 0.906
A1CF Canis familiaris ENSCAFG00000015581 I 0.897
A1CF Macropus eugenii ENSMEUG00000015909 I 0.897
a1cf Danio rerio ENSDARG00000002968 I 0.897
A1CF Monodelphis domestica ENSMODG00000016478 I 0.897
A1CF Gorilla gorilla ENSGGOG00000009670 I 0.893
A1CF Homo sapiens ENSG00000148584 D 0.888
A1CF Pan troglodytes ENSPTRG00000002508 I 0.888
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.882
AAH74127 Xenopus laevis AAH74127 I 0.877
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.867
A1CF Oryzias latipes ENSORLG00000013342 I 0.867
A1CF Dasypus novemcinctus ENSDNOG00000002829 I 0.859
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.859
A1CF Vicugna pacos ENSVPAG00000006130 I 0.847
A1cf Dipodomys ordii ENSDORG00000016548 I 0.842
A1CF Tursiops truncatus ENSTTRG00000013190 I 0.778
A1CF Ochotona princeps ENSOPRG00000010667 I 0.778
A1CF Sorex araneus ENSSARG00000005940 I 0.766
A1CF Felis catus ENSFCAG00000011179 I 0.734
a1cf Xenopus tropicalis ENSXETG00000006611 I 0.714
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.714
A1CF Microcebus murinus ENSMICG00000003377 I 0.709
RBM46 Equus caballus ENSECAG00000007649 I 0.700