A1CF (Ornithorhynchus anatinus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOANG00000007360 T39491_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000003765
M244_0.6 		Gallus gallus DUAAUUV RNAcompete
Ray et al.(2013)
RNCMPT00291 		0.932
A1CF
M001_0.6 		Homo sapiens WUAAUUR RNAcompete
Ray et al.(2013)
RNCMPT00001 		0.902
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOANP00000011715 RRM 25 94
ENSOANP00000011715 RRM 105 171
ENSOANP00000011715 RRM 200 266
ENSOANP00000011717 RRM 25 94
ENSOANP00000011717 RRM 105 171
ENSOANP00000011717 RRM 200 266

Links

Other RRM family RBPs
Other Ornithorhynchus anatinus RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A1CF Choloepus hoffmanni ENSCHOG00000009089 I 0.951
A1CF Sus scrofa ENSSSCG00000010431 I 0.951
A1CF Loxodonta africana ENSLAFG00000015462 I 0.951
A1CF Cavia porcellus ENSCPOG00000009807 I 0.946
A1CF Equus caballus ENSECAG00000010424 I 0.946
A1CF Macaca mulatta ENSMMUG00000007077 I 0.946
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.946
A1CF Bos taurus ENSBTAG00000021195 I 0.946
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.946
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.941
A1cf Rattus norvegicus ENSRNOG00000033195 I 0.941
A1CF Taeniopygia guttata ENSTGUG00000005090 I 0.936
A1CF Meleagris gallopavo ENSMGAG00000001507 I 0.932
ENSGALG00000003765 Gallus gallus ENSGALG00000003765 D 0.932
Ame_R002153 Ailuropoda melanoleuca Ame_R002153 I 0.931
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.931
A1cf Mus musculus ENSMUSG00000052595 I 0.931
A1CF Macropus eugenii ENSMEUG00000015909 I 0.922
A1CF Gorilla gorilla ENSGGOG00000009670 I 0.907
A1CF Pan troglodytes ENSPTRG00000002508 I 0.902
A1CF Echinops telfairi ENSETEG00000012527 I 0.902
A1CF Canis familiaris ENSCAFG00000015581 I 0.902
A1CF Homo sapiens ENSG00000148584 D 0.902
A1CF Monodelphis domestica ENSMODG00000016478 I 0.902
A1CF Anolis carolinensis ENSACAG00000015269 I 0.897
a1cf Danio rerio ENSDARG00000002968 I 0.887
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.873
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.868
A1CF Oryzias latipes ENSORLG00000013342 I 0.868
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.864
AAH74127 Xenopus laevis AAH74127 I 0.863
A1CF Dasypus novemcinctus ENSDNOG00000002829 I 0.861
A1cf Dipodomys ordii ENSDORG00000016548 I 0.853
A1CF Vicugna pacos ENSVPAG00000006130 I 0.848
A1CF Ochotona princeps ENSOPRG00000010667 I 0.779
A1CF Tursiops truncatus ENSTTRG00000013190 I 0.779
A1CF Sorex araneus ENSSARG00000005940 I 0.775
A1CF Felis catus ENSFCAG00000011179 I 0.735
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.720
A1CF Microcebus murinus ENSMICG00000003377 I 0.711
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.707
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.707
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.707
RBM46 Equus caballus ENSECAG00000007649 I 0.702
a1cf Xenopus tropicalis ENSXETG00000006611 I 0.701
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.700
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.700