A1CF (Echinops telfairi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSETEG00000012527 T36966_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A1CF
M001_0.6 		Homo sapiens WUAAUUR RNAcompete
Ray et al.(2013)
RNCMPT00001 		0.936
ENSGALG00000003765
M244_0.6 		Gallus gallus DUAAUUV RNAcompete
Ray et al.(2013)
RNCMPT00291 		0.906
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSETEP00000010159 RRM 62 131
ENSETEP00000010159 RRM 142 208
ENSETEP00000010159 RRM 237 298

Links

Other RRM family RBPs
Other Echinops telfairi RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A1CF Loxodonta africana ENSLAFG00000015462 I 0.950
A1CF Macaca mulatta ENSMMUG00000007077 I 0.941
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.941
A1CF Choloepus hoffmanni ENSCHOG00000009089 I 0.941
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.941
A1CF Sus scrofa ENSSSCG00000010431 I 0.941
A1CF Cavia porcellus ENSCPOG00000009807 I 0.936
A1CF Pan troglodytes ENSPTRG00000002508 I 0.936
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.936
A1CF Homo sapiens ENSG00000148584 D 0.936
A1CF Bos taurus ENSBTAG00000021195 I 0.936
A1CF Equus caballus ENSECAG00000010424 I 0.936
A1cf Rattus norvegicus ENSRNOG00000033195 I 0.936
A1CF Gorilla gorilla ENSGGOG00000009670 I 0.936
A1cf Mus musculus ENSMUSG00000052595 I 0.926
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.921
Ame_R002153 Ailuropoda melanoleuca Ame_R002153 I 0.916
A1CF Taeniopygia guttata ENSTGUG00000005090 I 0.911
ENSGALG00000003765 Gallus gallus ENSGALG00000003765 D 0.906
A1CF Meleagris gallopavo ENSMGAG00000001507 I 0.906
A1CF Ornithorhynchus anatinus ENSOANG00000007360 I 0.902
A1CF Canis familiaris ENSCAFG00000015581 I 0.891
A1CF Anolis carolinensis ENSACAG00000015269 I 0.891
A1CF Monodelphis domestica ENSMODG00000016478 I 0.876
A1CF Macropus eugenii ENSMEUG00000015909 I 0.876
a1cf Danio rerio ENSDARG00000002968 I 0.866
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.847
A1CF Oryzias latipes ENSORLG00000013342 I 0.847
A1CF Dasypus novemcinctus ENSDNOG00000002829 I 0.845
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.842
AAH74127 Xenopus laevis AAH74127 I 0.842
A1CF Vicugna pacos ENSVPAG00000006130 I 0.842
A1cf Dipodomys ordii ENSDORG00000016548 I 0.832
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.824
A1CF Sorex araneus ENSSARG00000005940 I 0.797
A1CF Tursiops truncatus ENSTTRG00000013190 I 0.767
A1CF Felis catus ENSFCAG00000011179 I 0.764
A1CF Ochotona princeps ENSOPRG00000010667 I 0.762
a1cf Xenopus tropicalis ENSXETG00000006611 I 0.724
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.707