CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GE14506
(
Drosophila yakuba
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0232110
T44295_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0259516
RRM
1117
1181
LLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLSQGIALCKYTTREEANKAQMALNNCVLANTTIF
Links
Other
RRM
family RBPs
Other
Drosophila yakuba
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GM26772
Drosophila sechellia
FBgn0181625
N
0.985
GD24374
Drosophila simulans
FBgn0195715
N
0.985
gw
Drosophila melanogaster
FBgn0051992
N
0.985
GG16439
Drosophila erecta
FBgn0108670
N
0.969
GF19039
Drosophila ananassae
FBgn0096051
N
0.954
GJ14351
Drosophila virilis
FBgn0201564
N
0.938
GA16600-RA
Drosophila pseudoobscura
FBgn0076615
N
0.938
GL18179
Drosophila persimilis
FBgn0155782
N
0.938
GH23931
Drosophila grimshawi
FBgn0131388
N
0.938
GK13697
Drosophila willistoni
FBgn0215705
N
0.908
AGAP007802
Anopheles gambiae
AGAP007802
N
0.846
AAEL007436
Aedes aegypti
AAEL007436
N
0.815
CPIJ010645
Culex quinquefasciatus
CPIJ010645
N
0.800
CpipJ_CPIJ010645
Culex pipiens
CpipJ_CPIJ010645
N
0.800
BGIBMGA005589
Bombyx mori
BGIBMGA005589
N
0.800
AAEL801228
Aedes aegypti
AAEL007447
N
0.800
DGIL_AUG5s11561g1t1
Acyrtosiphon pisum
DGIL_AUG5s11561g1t1
N
0.769
AGAP007808
Anopheles gambiae
AGAP007808
N
0.754
amel4_ncbi_hmm5263
Apis mellifera
amel4_ncbi_hmm5263
N
0.738
CPIJ011735
Culex quinquefasciatus
CPIJ011735
N
0.708
CpipJ_CPIJ011735
Culex pipiens
CpipJ_CPIJ011735
N
0.708