XM_002877953.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.5__1875__AT3G54770.1 T44549_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.5__1875__AT3G54770.1 RRM 19 87

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT3G54770 Arabidopsis thaliana AT3G54770-TAIR-G N 0.986
mgf016660m Mimulus guttatus mgf016660m I 0.841
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.826
PK29603.1 Cannabis sativa PK29603.1 I 0.826
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.826
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.812
29923.m000811 Ricinus communis 29923.m000811 I 0.797
ppa026384m Prunus persica ppa026384m I 0.797
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.783
GRMZM2G145562 Zea mays GRMZM2G145562 N 0.768
MDP0000125082 Malus x domestica MDP0000125082 I 0.768
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.768
MDP0000308970 Malus x domestica MDP0000308970 I 0.768
SB01G038700 Sorghum bicolor Sb01g038700 I 0.768
B9HLZ0_POPTR Populus trichocarpa POPTR_0008s04430 I 0.768
Glyma16g01780.1 Glycine max Glyma16g01780.1 N 0.761
Glyma07g05250.1 Glycine max Glyma07g05250.1 N 0.757
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.754
chr1.CM0105.870.nc Lotus japonicus chr1.CM0105.870.nc N 0.754