Cucsa.165980 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.165980 T49574_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.165980.1 RRM 28 95
Cucsa.165980.2 RRM 28 95
Cucsa.165980.3 RRM 28 95

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.912
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.882
mgf016660m Mimulus guttatus mgf016660m I 0.882
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.882
PK29603.1 Cannabis sativa PK29603.1 I 0.870
29923.m000811 Ricinus communis 29923.m000811 I 0.868
ppa026384m Prunus persica ppa026384m I 0.868
MDP0000308970 Malus x domestica MDP0000308970 I 0.853
B9HLZ0_POPTR Populus trichocarpa POPTR_0008s04430 I 0.853
MDP0000125082 Malus x domestica MDP0000125082 I 0.838
XM_002877953.1 Arabidopsis lyrata fgenesh2_kg.5__1875__AT3G54770.1 N 0.826
chr1.CM0105.870.nc Lotus japonicus chr1.CM0105.870.nc N 0.826
AT3G54770 Arabidopsis thaliana AT3G54770-TAIR-G N 0.812
Glyma07g05250.1 Glycine max Glyma07g05250.1 N 0.800
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.794
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.794
SB01G038700 Sorghum bicolor Sb01g038700 I 0.779
GRMZM2G145562 Zea mays GRMZM2G145562 N 0.779
Glyma16g01780.1 Glycine max Glyma16g01780.1 N 0.775
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.765
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.750
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.735
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.735
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.735
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.721
29908.m006046 Ricinus communis 29908.m006046 I 0.721
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.721
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.721
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.721
PK21213.1 Cannabis sativa PK21213.1 I 0.721
mgf017214m Mimulus guttatus mgf017214m I 0.721
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.710
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.710
MDP0000134468 Malus x domestica MDP0000134468 I 0.706
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.706
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.706
ppa009716m Prunus persica ppa009716m I 0.706
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.706
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.706
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.706