LOC_Os03g17760 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os03g17760 T44989_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os03g17760.1 RRM 35 102

Links

Other RRM family RBPs
Other Oryza sativa RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB01G038700 Sorghum bicolor Sb01g038700 I 0.985
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.971
GRMZM2G145562 Zea mays GRMZM2G145562 N 0.912
ppa026384m Prunus persica ppa026384m I 0.882
MDP0000125082 Malus x domestica MDP0000125082 I 0.853
29923.m000811 Ricinus communis 29923.m000811 I 0.853
MDP0000308970 Malus x domestica MDP0000308970 I 0.853
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.838
B9HLZ0_POPTR Populus trichocarpa POPTR_0008s04430 I 0.838
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.824
chr1.CM0105.870.nc Lotus japonicus chr1.CM0105.870.nc N 0.812
mgf016660m Mimulus guttatus mgf016660m I 0.809
PK29603.1 Cannabis sativa PK29603.1 I 0.797
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.794
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.794
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.779
Glyma07g05250.1 Glycine max Glyma07g05250.1 N 0.771
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.765
SB04G030020 Sorghum bicolor Sb04g030020 I 0.765
Glyma16g01780.1 Glycine max Glyma16g01780.1 N 0.761
XM_002877953.1 Arabidopsis lyrata fgenesh2_kg.5__1875__AT3G54770.1 N 0.754
AT3G54770 Arabidopsis thaliana AT3G54770-TAIR-G N 0.754
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.750
ppa009716m Prunus persica ppa009716m I 0.750
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.750
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.735
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.735
ppa009964m Prunus persica ppa009964m I 0.735
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.735
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.721
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.721
MDP0000184420 Malus x domestica MDP0000184420 I 0.721
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.721
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.710
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.706
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.706
29983.m003293 Ricinus communis 29983.m003293 I 0.706
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.706
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.706
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.706
mgf002440m Mimulus guttatus mgf002440m N 0.706
MDP0000138486 Malus x domestica MDP0000138486 I 0.706