mgf016660m (Mimulus guttatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 mgf016660m T53759_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
mgf016660m RRM 24 91

Links

Other RRM family RBPs
Other Mimulus guttatus RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.882
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.868
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.868
XM_002877953.1 Arabidopsis lyrata fgenesh2_kg.5__1875__AT3G54770.1 N 0.841
AT3G54770 Arabidopsis thaliana AT3G54770-TAIR-G N 0.841
PK29603.1 Cannabis sativa PK29603.1 I 0.841
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.838
29923.m000811 Ricinus communis 29923.m000811 I 0.838
ppa026384m Prunus persica ppa026384m I 0.838
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.824
SB01G038700 Sorghum bicolor Sb01g038700 I 0.824
B9HLZ0_POPTR Populus trichocarpa POPTR_0008s04430 I 0.824
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.809
MDP0000125082 Malus x domestica MDP0000125082 I 0.809
GRMZM2G145562 Zea mays GRMZM2G145562 N 0.809
MDP0000308970 Malus x domestica MDP0000308970 I 0.809
chr1.CM0105.870.nc Lotus japonicus chr1.CM0105.870.nc N 0.797
Glyma16g01780.1 Glycine max Glyma16g01780.1 N 0.746
Glyma07g05250.1 Glycine max Glyma07g05250.1 N 0.743
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.735
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.735
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.735
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.725
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.725
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.721
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.721
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.721
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.721
mgf017214m Mimulus guttatus mgf017214m I 0.721
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.721
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.710
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.710
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.710
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.706
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.706
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.706
MDP0000548950 Malus x domestica MDP0000548950 I 0.706
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.706
ppa009716m Prunus persica ppa009716m I 0.706
MDP0000744398 Malus x domestica MDP0000744398 I 0.706
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.706
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.706
PK21213.1 Cannabis sativa PK21213.1 I 0.706
ppa016222m Prunus persica ppa016222m I 0.706
MDP0000488395 Malus x domestica MDP0000488395 I 0.706
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.706
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.706
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.706