XM_002883819.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 scaffold_303681.1 T46118_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_303681.1 RRM 22 89

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.853
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.853
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.809
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.809
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.809
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.794
mgf016428m Mimulus guttatus mgf016428m N 0.794
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.768
ppa013405m Prunus persica ppa013405m N 0.768
ppa013407m Prunus persica ppa013407m N 0.768
PK21780.1 Cannabis sativa PK21780.1 N 0.768
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.768
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.768
29868.m000351 Ricinus communis 29868.m000351 N 0.768
MDP0000185506 Malus x domestica MDP0000185506 N 0.768
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.768
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.768
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.754
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.754
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.754
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.754
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.739
SB01G003790 Sorghum bicolor Sb01g003790 N 0.739
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.739
MDP0000916880 Malus x domestica MDP0000916880 N 0.725
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.725
SPPG_04286 Spizellomyces punctatus SPPG_04286 N 0.721
s_454910 Phytophthora sojae s_454910 N 0.721
PITG_10282 Phytophthora infestans PITG_10282 N 0.721
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.721
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.710
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.706
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.706
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.706