SNAPOd2T00014922001 (Oikopleura dioica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 SNAPOd2T00014922001 T48410_0.6 Genoscope (2013-Jan-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00014922001 RRM 266 334

Links

Other RRM family RBPs
Other Oikopleura dioica RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.746
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.746
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.732
ENSCSAVG00000005823 Ciona savignyi ENSCSAVG00000005823 N 0.732
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.732
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.732
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.732
estExt_fgenesh1_kg.C_1730002 Daphnia pulex estExt_fgenesh1_kg.C_1730002 N 0.718
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.718
NCBP2 Gallus gallus ENSGALG00000006843 N 0.718
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.718
ENSCING00000003079 Ciona intestinalis ENSCING00000003079 N 0.718
estExt_Genewise1.C_sca_180152 Lottia gigantea estExt_Genewise1.C_sca_180152 N 0.718
ENSCING00000016926 Ciona intestinalis ENSCING00000016926 N 0.718
ncbp2 Danio rerio ENSDARG00000014898 N 0.718
NCBP2 Tetraodon nigroviridis ENSTNIG00000006065 N 0.704
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.704
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.704
PHUM535920 Pediculus humanus PHUM535920 N 0.704
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.704
NCBP2 Takifugu rubripes ENSTRUG00000018355 N 0.704
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.704
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.704
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.704
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.704
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.704
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.704
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.704