gw.93.114.1 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw.93.114.1 T53444_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw.93.114.1 RRM 31 101

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

155 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 1.000
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.873
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.873
PHUM535920 Pediculus humanus PHUM535920 N 0.859
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.845
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.845
NCBP2 Gallus gallus ENSGALG00000006843 N 0.845
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.845
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.845
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.845
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.845
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.845
NCBP2 Equus caballus ENSECAG00000016153 N 0.845
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.845
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.845
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.845
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.845
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.845
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.845
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.845
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.845
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.845
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.845
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.845
NCBP2 Homo sapiens ENSG00000114503 N 0.845
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.845
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.831
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.831
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.831
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.831
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.831
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.831
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.831
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.831
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.831
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.831
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.831
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.817
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.817
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.817
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.817
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.817
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.817
ncbp2 Danio rerio ENSDARG00000014898 N 0.803
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.803
DGIL_AUG5s12516g4t1 Acyrtosiphon pisum DGIL_AUG5s12516g4t1 N 0.803
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.803
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.803
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.803
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.803
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.803
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.789
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.789
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.789
XP_001187788.1 Strongylocentrotus purpuratus XP_001187788.1 N 0.789
estExt_fgenesh1_kg.C_1730002 Daphnia pulex estExt_fgenesh1_kg.C_1730002 N 0.789
XP_802051.1 Strongylocentrotus purpuratus XP_802051.1 N 0.789
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.775
estExt_Genewise1.C_sca_180152 Lottia gigantea estExt_Genewise1.C_sca_180152 N 0.775
ncbp2 Xenopus tropicalis ENSXETG00000019384 N 0.775
NCBP2 Takifugu rubripes ENSTRUG00000018355 N 0.775
NCBP2L Loxodonta africana ENSLAFG00000027581 N 0.775
NCBP2 Tetraodon nigroviridis ENSTNIG00000006065 N 0.775
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.775
AAH72902 Xenopus laevis AAH72902 N 0.775
P52299 Xenopus laevis P52299 N 0.775
DGIL_AUG5s15103g4t1 Acyrtosiphon pisum DGIL_AUG5s15103g4t1 N 0.775
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.775
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.775
CpipJ_CPIJ003555 Culex pipiens CpipJ_CPIJ003555 N 0.761
NCBP2 Sorex araneus ENSSARG00000014294 N 0.761
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.761
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.761
CAA59259 Xenopus laevis CAA59259 N 0.761
MCYG_04468 Microsporum canis MCYG_04468 N 0.761
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.761
LOAG_03270 Loa loa LOAG_03270 N 0.761
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.761
NCU00210 Neurospora crassa NCU00210 N 0.761
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.761
2118330B Xenopus laevis 2118330B N 0.761
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.761
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.761
TERG_03424 Trichophyton rubrum TERG_03424 N 0.761
NCBP2_CULQU Culex quinquefasciatus CPIJ003555 N 0.761
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.761
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.761
GI23717 Drosophila mojavensis FBgn0146442 N 0.746
GF16759 Drosophila ananassae FBgn0093780 N 0.746
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.746
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.746
GJ23276 Drosophila virilis FBgn0210378 N 0.746
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.746
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.746
GK11244 Drosophila willistoni FBgn0213255 N 0.746
Bm1_02935 Brugia malayi Bm1_02935 N 0.746
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.746
estExt_Genewise1.C_5160046 Capitella teleta estExt_Genewise1.C_5160046 N 0.746
GH15101 Drosophila grimshawi FBgn0122576 N 0.746
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.746
ENSCSAVG00000005823 Ciona savignyi ENSCSAVG00000005823 N 0.746
ENSCING00000016926 Ciona intestinalis ENSCING00000016926 N 0.746
ENSCING00000003079 Ciona intestinalis ENSCING00000003079 N 0.746
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.746
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.746
XP_002166119.1 Hydra magnipapillata XP_002166119.1 N 0.746
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.746
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.746
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.746
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.746
91084 Helobdella robusta 91084 N 0.746
SNAPOd2T00014922001 Oikopleura dioica SNAPOd2T00014922001 N 0.746
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.746
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.746
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.732
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.732
GL12592 Drosophila persimilis FBgn0150198 N 0.732
GM15280 Drosophila sechellia FBgn0170200 N 0.732
GD19204 Drosophila simulans FBgn0190709 N 0.732
GE25514 Drosophila yakuba FBgn0242580 N 0.732
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.732
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.732
GG22670 Drosophila erecta FBgn0114835 N 0.732
gw1.12.351.1 Coccomyxa C 169 gw1.12.351.1 N 0.732
An12g03930 Aspergillus niger CADANGAG00009835 N 0.732
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.732
CAOG_06930 Capsaspora owczarzaki CAOG_06930 N 0.732
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.732
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.732
gw1.11.372.1 Chlorella vulgaris gw1.11.372.1 N 0.732
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.732
Cbp20 Drosophila melanogaster FBgn0022943 N 0.732
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.732
GA11577-RA Drosophila pseudoobscura FBgn0071628 N 0.732
estExt_fgenesh1_pm.C_20437 Schizophyllum commune estExt_fgenesh1_pm.C_20437 N 0.727
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.718
VDBG_06810 Verticillium albo atrum VDBG_06810 N 0.718
VDAG_05874 Verticillium dahliae VDAG_05874 N 0.718
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.718
fgenesh1_pg.C_scaffold_1000747 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1000747 N 0.718
Ppa-ncbp-2 Pristionchus pacificus PPA17381 N 0.718
FGSG_05488 Fusarium graminearum FGSG_05488 N 0.718
NCBP2 Gasterosteus aculeatus ENSGACG00000006238 N 0.718
GJ18756 Drosophila virilis FBgn0205908 N 0.718
estExt_fgenesh2_kg.C_120041 Serpula lacrymans estExt_fgenesh2_kg.C_120041 N 0.714
estExt_fgenesh2_kg.C_20664 Agaricus bisporus estExt_fgenesh2_kg.C_20664 N 0.714
estExt_Genewise1_worm.C_60324 Laccaria bicolor estExt_Genewise1_worm.C_60324 N 0.714
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.704
Sjc_0008080 Schistosoma japonicum Sjc_0008080 N 0.704
Minc02990 Meloidogyne incognita Minc02990 N 0.704
SJAG_01064 Schizosaccharomyces japonicus SJAG_01064 N 0.704
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.704
Minc06129 Meloidogyne incognita Minc06129 N 0.704
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.704
gw1.1.2136.1 Pleurotus ostreatus gw1.1.2136.1 N 0.701