ENSCING00000003079 (Ciona intestinalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCING00000003079 T35373_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000006257 RRM 47 117

Links

Other RRM family RBPs
Other Ciona intestinalis RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCING00000016926 Ciona intestinalis ENSCING00000016926 N 1.000
ENSCSAVG00000005823 Ciona savignyi ENSCSAVG00000005823 N 0.944
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.817
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.817
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.817
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.803
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.803
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.803
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.803
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.789
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.789
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.789
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.789
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.789
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.789
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.789
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.789
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.789
PHUM535920 Pediculus humanus PHUM535920 N 0.789
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.789
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.789
AAH72902 Xenopus laevis AAH72902 N 0.789
P52299 Xenopus laevis P52299 N 0.789
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.789
CpipJ_CPIJ003555 Culex pipiens CpipJ_CPIJ003555 N 0.789
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.789
NCBP2_CULQU Culex quinquefasciatus CPIJ003555 N 0.789
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.789
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.789
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.789
NCBP2 Homo sapiens ENSG00000114503 N 0.789
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.789
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.789
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.789
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.789
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.789
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.789
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.789
NCBP2 Equus caballus ENSECAG00000016153 N 0.789
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.789
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.789
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.789
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.775
CAA59259 Xenopus laevis CAA59259 N 0.775
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.775
XP_002166119.1 Hydra magnipapillata XP_002166119.1 N 0.775
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.775
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.775
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.775
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.775
estExt_Genewise1.C_sca_180152 Lottia gigantea estExt_Genewise1.C_sca_180152 N 0.775
2118330B Xenopus laevis 2118330B N 0.775
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.775
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.775
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.775
91084 Helobdella robusta 91084 N 0.761
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.761
Ppa-ncbp-2 Pristionchus pacificus PPA17381 N 0.761
ncbp2 Xenopus tropicalis ENSXETG00000019384 N 0.761
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.761
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.761
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.761
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.761
NCBP2 Gallus gallus ENSGALG00000006843 N 0.761
LOAG_03270 Loa loa LOAG_03270 N 0.761
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.746
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.746
DGIL_AUG5s12516g4t1 Acyrtosiphon pisum DGIL_AUG5s12516g4t1 N 0.746
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.746
Bm1_02935 Brugia malayi Bm1_02935 N 0.746
GM15280 Drosophila sechellia FBgn0170200 N 0.746
GL12592 Drosophila persimilis FBgn0150198 N 0.746
GD19204 Drosophila simulans FBgn0190709 N 0.746
Cbp20 Drosophila melanogaster FBgn0022943 N 0.746
GK11244 Drosophila willistoni FBgn0213255 N 0.746
GI23717 Drosophila mojavensis FBgn0146442 N 0.746
GH15101 Drosophila grimshawi FBgn0122576 N 0.746
GA11577-RA Drosophila pseudoobscura FBgn0071628 N 0.746
GF16759 Drosophila ananassae FBgn0093780 N 0.746
GG22670 Drosophila erecta FBgn0114835 N 0.746
NCBP2 Takifugu rubripes ENSTRUG00000018355 N 0.746
GE25514 Drosophila yakuba FBgn0242580 N 0.746
GJ23276 Drosophila virilis FBgn0210378 N 0.746
XP_802051.1 Strongylocentrotus purpuratus XP_802051.1 N 0.732
NCBP2 Sorex araneus ENSSARG00000014294 N 0.732
NCBP2 Tetraodon nigroviridis ENSTNIG00000006065 N 0.732
ncbp2 Danio rerio ENSDARG00000014898 N 0.732
NCBP2L Loxodonta africana ENSLAFG00000027581 N 0.732
estExt_fgenesh1_kg.C_1730002 Daphnia pulex estExt_fgenesh1_kg.C_1730002 N 0.732
GJ18756 Drosophila virilis FBgn0205908 N 0.732
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.732
XP_001187788.1 Strongylocentrotus purpuratus XP_001187788.1 N 0.732
SNAPOd2T00014922001 Oikopleura dioica SNAPOd2T00014922001 N 0.718
DGIL_AUG5s15103g4t1 Acyrtosiphon pisum DGIL_AUG5s15103g4t1 N 0.718
NCBP2 Gasterosteus aculeatus ENSGACG00000006238 N 0.718
Sjc_0008080 Schistosoma japonicum Sjc_0008080 N 0.718
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.718
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.718
NCBP2L Sus scrofa ENSSSCG00000012562 N 0.704
NCBP2L Canis familiaris ENSCAFG00000017990 N 0.704
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.704
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.704
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.704
estExt_Genewise1.C_5160046 Capitella teleta estExt_Genewise1.C_5160046 N 0.704
Minc02990 Meloidogyne incognita Minc02990 N 0.704
Minc06129 Meloidogyne incognita Minc06129 N 0.704
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.704
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.704
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.704
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.704