amel4_ncbi_hmm3188 (Apis mellifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 amel4_ncbi_hmm3188 T31904_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
amel4_ncbi_hmm3188 RRM 41 111

Links

Other RRM family RBPs
Other Apis mellifera RBPs

176 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.944
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.915
PHUM535920 Pediculus humanus PHUM535920 N 0.901
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.887
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.887
NCBP2 Homo sapiens ENSG00000114503 N 0.887
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.887
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.887
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.887
NCBP2 Equus caballus ENSECAG00000016153 N 0.887
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.887
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.887
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.887
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.887
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.887
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.887
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.887
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.887
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.887
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.887
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.887
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.887
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.887
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.887
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.887
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.887
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.887
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.887
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.873
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.873
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.873
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.873
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.873
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.873
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.873
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.873
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.873
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.873
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.859
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.859
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.859
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.859
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.859
NCBP2 Gallus gallus ENSGALG00000006843 N 0.859
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.859
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.845
CpipJ_CPIJ003555 Culex pipiens CpipJ_CPIJ003555 N 0.845
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.845
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.845
NCBP2_CULQU Culex quinquefasciatus CPIJ003555 N 0.845
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.845
DGIL_AUG5s12516g4t1 Acyrtosiphon pisum DGIL_AUG5s12516g4t1 N 0.831
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.831
LOAG_03270 Loa loa LOAG_03270 N 0.817
GG22670 Drosophila erecta FBgn0114835 N 0.817
GF16759 Drosophila ananassae FBgn0093780 N 0.817
P52299 Xenopus laevis P52299 N 0.817
AAH72902 Xenopus laevis AAH72902 N 0.817
GH15101 Drosophila grimshawi FBgn0122576 N 0.817
GI23717 Drosophila mojavensis FBgn0146442 N 0.817
GJ23276 Drosophila virilis FBgn0210378 N 0.817
GA11577-RA Drosophila pseudoobscura FBgn0071628 N 0.817
GK11244 Drosophila willistoni FBgn0213255 N 0.817
GE25514 Drosophila yakuba FBgn0242580 N 0.817
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.817
GL12592 Drosophila persimilis FBgn0150198 N 0.817
GD19204 Drosophila simulans FBgn0190709 N 0.817
GM15280 Drosophila sechellia FBgn0170200 N 0.817
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.817
ncbp2 Danio rerio ENSDARG00000014898 N 0.817
Cbp20 Drosophila melanogaster FBgn0022943 N 0.817
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.817
NCBP2 Takifugu rubripes ENSTRUG00000018355 N 0.817
ncbp2 Xenopus tropicalis ENSXETG00000019384 N 0.817
CAA59259 Xenopus laevis CAA59259 N 0.803
XP_002166119.1 Hydra magnipapillata XP_002166119.1 N 0.803
2118330B Xenopus laevis 2118330B N 0.803
ENSCING00000003079 Ciona intestinalis ENSCING00000003079 N 0.803
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.803
ENSCING00000016926 Ciona intestinalis ENSCING00000016926 N 0.803
91084 Helobdella robusta 91084 N 0.803
DGIL_AUG5s15103g4t1 Acyrtosiphon pisum DGIL_AUG5s15103g4t1 N 0.803
Bm1_02935 Brugia malayi Bm1_02935 N 0.803
NCBP2 Tetraodon nigroviridis ENSTNIG00000006065 N 0.803
estExt_Genewise1.C_sca_180152 Lottia gigantea estExt_Genewise1.C_sca_180152 N 0.803
NCBP2 Sorex araneus ENSSARG00000014294 N 0.803
GJ18756 Drosophila virilis FBgn0205908 N 0.803
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.789
XP_001187788.1 Strongylocentrotus purpuratus XP_001187788.1 N 0.789
XP_802051.1 Strongylocentrotus purpuratus XP_802051.1 N 0.789
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.789
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.789
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.775
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.775
ENSCSAVG00000005823 Ciona savignyi ENSCSAVG00000005823 N 0.775
NCBP2L Loxodonta africana ENSLAFG00000027581 N 0.775
estExt_Genewise1.C_5160046 Capitella teleta estExt_Genewise1.C_5160046 N 0.775
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.761
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.761
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.761
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.761
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.761
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.761
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.761
NCU00210 Neurospora crassa NCU00210 N 0.761
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.761
NCBP2 Gasterosteus aculeatus ENSGACG00000006238 N 0.761
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.761
estExt_fgenesh1_kg.C_1730002 Daphnia pulex estExt_fgenesh1_kg.C_1730002 N 0.761
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.746
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.746
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.746
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.746
SOCG_01831 Schizosaccharomyces octosporus SOCG_01831 N 0.746
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.746
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.746
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.746
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.746
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.746
An12g03930 Aspergillus niger CADANGAG00009835 N 0.746
TERG_03424 Trichophyton rubrum TERG_03424 N 0.746
Ppa-ncbp-2 Pristionchus pacificus PPA17381 N 0.746
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.746
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.746
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.746
MCYG_04468 Microsporum canis MCYG_04468 N 0.746
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.746
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.746
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.746
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.746
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.746
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.746
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.746
SNAPOd2T00014922001 Oikopleura dioica SNAPOd2T00014922001 N 0.732
CAOG_06930 Capsaspora owczarzaki CAOG_06930 N 0.732
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.732
e_gw1.1.927.1 Trichoplax adhaerens e_gw1.1.927.1 N 0.732
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.732
SPOG_01217 Schizosaccharomyces cryophilus SPOG_01217 N 0.732
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.732
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.732
fgenesh1_pg.C_scaffold_1000747 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1000747 N 0.732
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.732
Sjc_0008080 Schistosoma japonicum Sjc_0008080 N 0.732
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.732
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.732
FGSG_05488 Fusarium graminearum FGSG_05488 N 0.718
VDAG_05874 Verticillium dahliae VDAG_05874 N 0.718
VDBG_06810 Verticillium albo atrum VDBG_06810 N 0.718
PGTG_01720 Puccinia graminis PGTG_01720 N 0.718
cbc2 Schizosaccharomyces pombe SPBC13A2.01c N 0.718
e_gw1.40.70.1 Melampsora laricis populina e_gw1.40.70.1 N 0.718
NCBP2L Canis familiaris ENSCAFG00000017990 N 0.718
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.718
NCBP2L Sus scrofa ENSSSCG00000012562 N 0.718
SB04G025800 Sorghum bicolor Sb04g025800 N 0.718
LOC_Os02g39890 Oryza sativa LOC_Os02g39890 N 0.718
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.718
Minc02990 Meloidogyne incognita Minc02990 N 0.718
Minc06129 Meloidogyne incognita Minc06129 N 0.718
gw1.12.351.1 Coccomyxa C 169 gw1.12.351.1 N 0.718
gw1.11.372.1 Chlorella vulgaris gw1.11.372.1 N 0.718
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.718
estExt_fgenesh1_pm.C_20437 Schizophyllum commune estExt_fgenesh1_pm.C_20437 N 0.714
PK11911.1 Cannabis sativa PK11911.1 N 0.704
GSVIVG00020599001 Vitis vinifera GSVIVG00020599001 N 0.704
NCBP2L Microcebus murinus ENSMICG00000016081 N 0.704
BRADI3G48560 Brachypodium distachyon BRADI3G48560 N 0.704
SJAG_01064 Schizosaccharomyces japonicus SJAG_01064 N 0.704
Glyma13g37030.1 Glycine max Glyma13g37030.1 N 0.704
gw1.1.1171.1 Sporobolomyces roseus gw1.1.1171.1 N 0.704
Glyma12g33400.1 Glycine max Glyma12g33400.1 N 0.704
e_gw1.80.70.1 Selaginella moellendorfii e_gw1.80.70.1 N 0.704
cassava43646.valid.m1 Manihot esculenta cassava43646.valid.m1 N 0.704
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.704
cassava43645.valid.m1 Manihot esculenta cassava43645.valid.m1 N 0.704